Prof. Dr. BERNA SARIYAR AKBULUT

Yayın Ağı

Makaleler 60

1. Waste-to-value conversion of orange waste into l-Tyrosine

Abdullahoglu E., Kurpejović E., Junker N., SAYAR N. A., Wendisch V. F., SARIYAR AKBULUT B.

Systems Microbiology and Biomanufacturing , cilt.6, sa.5, 2026 (ESCI, Scopus)

2. Tailoring Corynebacterium glutamicum for Sustainable Biomanufacturing: From Traditional to Cutting-Edge Technologies

Kurpejović E., SARIYAR AKBULUT B., Avci F. G.

Molecular Biotechnology , cilt.68, sa.3, ss.1106-1126, 2026 (SCI-Expanded, Scopus)

3. Exploring the coupling of dynamic residues in TEM-1 β-lactamase and their role in activity

Avci F. G., Vardar Ulu D., Atas Erden B., ALTINIŞIK KAYA F. E., Ozkan S. B., SARIYAR AKBULUT B.

Journal of Biomolecular Structure and Dynamics , cilt.44, sa.8, ss.3752-3762, 2026 (SCI-Expanded, Scopus)

4. Production of the terpenoid-based biofuel α-bisabolene by metabolically engineered Corynebacterium glutamicum

Atas Erden B., Seeger J., Avci F. G., Wendisch V. F., SARIYAR AKBULUT B.

World Journal of Microbiology and Biotechnology , cilt.41, sa.10, 2025 (SCI-Expanded, Scopus) Sürdürülebilir Kalkınma

5. Antivirulence therapy: type IV pilus as a druggable target for bacterial infections

Basaran E., Avci F. G., Ozcan A., Kula C., Ben Ali Hassine S., Keskin O., et al.

Medicinal Chemistry Research , cilt.34, sa.2, ss.285-300, 2025 (SCI-Expanded, Scopus)

6. De novo production of eumelanin in a fermentative process with Corynebacterium glutamicum

Kurpejović E., Karcioglu C., Abdullahoglu E., SAYAR N. A., Wendisch V. F., SARIYAR AKBULUT B.

Biocatalysis and Biotransformation , cilt.43, sa.3, ss.266-279, 2025 (SCI-Expanded, Scopus) Sürdürülebilir Kalkınma

7. Attenuation of Type IV pili activity by natural products

Yalkut K., Ben Ali Hassine S., Basaran E., KULA C., Ozcan A., Avci F. G., et al.

Journal of Biomolecular Structure and Dynamics , cilt.43, sa.12, ss.5719-5729, 2025 (SCI-Expanded, Scopus)

8. Development of a novel process towards an L-malate biorefinery using methanol as feedstock

Bastem G. M., SAYAR N. A., Brito L. F., Brautaset T., Virant D., SARIYAR AKBULUT B.

Chemical Engineering Research and Design , cilt.212, ss.158-167, 2024 (SCI-Expanded, Scopus)

9. Utilization of orange peel waste for sustainable amino acid production by Corynebacterium glutamicum

Junker N., SARIYAR AKBULUT B., Wendisch V. F.

Frontiers in Bioengineering and Biotechnology , cilt.12, 2024 (SCI-Expanded, Scopus) Sürdürülebilir Kalkınma

10. A two-step purification platform for efficient removal of Fab-related impurities: A case study for Ranibizumab

Tatli O., Oz Y., Dingiloglu B., Yalcinkaya D., Basturk E., Korkmaz M., et al.

Heliyon , cilt.9, sa.11, 2023 (SCI-Expanded, Scopus)

11. Piperidine-based natural products targeting Type IV pili antivirulence: A computational approach

Ozcan A., Keskin O., Sariyar Akbulut B., Özbek Sarica P.

JOURNAL OF MOLECULAR GRAPHICS & MODELLING , cilt.119, 2023 (SCI-Expanded, Scopus) Sürdürülebilir Kalkınma

12. Metabolic engineering of Corynebacterium glutamicum for L-tyrosine production from glucose and xylose

Kurpejović E., Burgardt A., Bastem G. M., Junker N., Wendisch V. F., SARIYAR AKBULUT B.

Journal of Biotechnology , cilt.363, ss.8-16, 2023 (SCI-Expanded, Scopus)

13. Valorization of hazelnut husk as a carbon source for L-DOPA production with Corynebacterium glutamicum

Pakalın B., Kurpejović E., Bastem G. M., SAYAR N. A., Wendisch V. F., Akbulut B.

Biochemical Engineering Journal , cilt.190, 2023 (SCI-Expanded, Scopus)

14. A review on the mechanistic details of OXA enzymes of ESKAPE pathogens

Avci F. G., Tastekil I., Jaisi A., ÖZBEK SARICA P., SARIYAR AKBULUT B.

PATHOGENS AND GLOBAL HEALTH , cilt.117, sa.3, ss.219-234, 2023 (SCI-Expanded, Scopus)

15. Can DapC be the missing aminotransferease in the arogenate route of L-tyrosine biosynthesis in Corynebacterium glutamicum?

ALTINIŞIK KAYA F. E., Kurpejovic E., Burgardt A., Wendisch V. F., SARIYAR AKBULUT B.

FEBS OPEN BIO , cilt.12, ss.180-181, 2022 (SCI-Expanded, Scopus)

16. Curcumin Displays Enhanced Solubility and Antibacterial Activities When Complexed with the Cell Penetrating Peptide pVEC

Koleoglu E., Acar T., DERMAN S., SARIYAR AKBULUT B.

INTERNATIONAL JOURNAL OF PEPTIDE RESEARCH AND THERAPEUTICS , cilt.28, sa.4, 2022 (SCI-Expanded, Scopus)

17. Carvacrol Enhances the Antimicrobial Potency of Berberine in Bacillus subtilis

Atas B., Aksoy C. S., Avci F. G., SAYAR N. A., Ulgen K., ÖZKIRIMLI ÖLMEZ E., et al.

CURRENT MICROBIOLOGY , cilt.79, sa.5, 2022 (SCI-Expanded, Scopus)

18. Curvularia lunata: A fungus for possible berberine transformation

Yılmaz D., AVCI F. G., SARIYAR AKBULUT B.

International Journal of Secondary Metabolite , cilt.9, sa.1, ss.66-73, 2022 (Scopus, TRDizin)

19. Tyrosinase-based production of L-DOPA by Corynebacterium glutamicum

Kurpejovic E., Wendisch V. F., SARIYAR AKBULUT B.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY , cilt.105, sa.24, ss.9103-9111, 2021 (SCI-Expanded, Scopus) Sürdürülebilir Kalkınma

20. Live Cell Imaging of Peptide Uptake Using a Microfluidic Platform

Yuce M., ÖZKIRIMLI ÖLMEZ E., SARIYAR AKBULUT B., Ulgen K.

INTERNATIONAL JOURNAL OF PEPTIDE RESEARCH AND THERAPEUTICS , cilt.27, ss.2003-2013, 2021 (SCI-Expanded, Scopus)

21. Potentiating the activity of berberine for Staphylococcus aureus in a combinatorial treatment with thymol

Aksoy C. S., Avci F. G., Ugurel O. M., Atas B., SAYAR N. A., Akbulut B.

MICROBIAL PATHOGENESIS , cilt.149, 2020 (SCI-Expanded, Scopus)

22. Identification of novel inhibitors of the ABC transporter BmrA

Serçinoğlu O., Senturk D., Altinisik K., Avci F., Frlan R., Tomašič T., et al.

BIOORGANIC CHEMISTRY , cilt.105, 2020 (SCI-Expanded, Scopus)

23. Repurposing bioactive aporphine alkaloids as efflux pump inhibitors

Avci F. G., Atas B., Aksoy C. S., Kurpejovic E., Toplan G. G., GÜRER Ç., et al.

FITOTERAPIA , cilt.139, 2019 (SCI-Expanded, Scopus)

24. Techno-economic analysis of caffeine and catechins production from black tea waste

SAYAR N. A., DURMAZ ŞAM S., PİNAR O., Serper D., SARIYAR AKBULUT B., KAZAN D., et al.

Food And Bioproducts Processing , cilt.118, ss.1-12, 2019 (SCI-Expanded, Scopus)

25. A method for the quantitative determination of glycerophospholipid regioisomers by UPLC-ESI-MS/MS

Wozny K., Lehmann W. D., Wozny M., SARIYAR AKBULUT B., Bruegger B.

ANALYTICAL AND BIOANALYTICAL CHEMISTRY , cilt.411, sa.4, ss.915-924, 2019 (SCI-Expanded, Scopus)

26. What Are the Multi-Omics Mechanisms for Adaptation by Microorganisms to High Alkalinity? A Transcriptomic and Proteomic Study of a Bacillus Strain with Industrial Potential

ALTINIŞIK KAYA F. E., Avci F. G., SAYAR N. A., KAZAN D., SAYAR A. A., SARIYAR AKBULUT B.

OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY , cilt.22, sa.11, ss.717-732, 2018 (SCI-Expanded, Scopus) Sürdürülebilir Kalkınma

27. Retro-techno-economic evaluation of acetic acid production using cotton stalk as feedstock

SAYAR N. A., KAZAN D., PİNAR O., SARIYAR AKBULUT B., SAYAR A. A.

JOURNAL OF MATERIAL CYCLES AND WASTE MANAGEMENT , cilt.20, sa.4, ss.2077-2088, 2018 (SCI-Expanded, Scopus) Sürdürülebilir Kalkınma

28. Membrane Active Peptides and Their Biophysical Characterization

Avci F. G., SARIYAR AKBULUT B., ÖZKIRIMLI ÖLMEZ E.

BIOMOLECULES , cilt.8, sa.3, 2018 (SCI-Expanded, Scopus)

29. Targeting a hidden site on class A beta-lactamases

Avci F. G., ALTINIŞIK KAYA F. E., Karacan I., Karagoz D. S., Ersahin S., Eren A., et al.

JOURNAL OF MOLECULAR GRAPHICS & MODELLING , cilt.84, ss.125-133, 2018 (SCI-Expanded, Scopus)

30. pVEC hydrophobic N-terminus is critical for antibacterial activity

ALAYBEYOĞLU B., SARIYAR AKBULUT B., ÖZKIRIMLI ÖLMEZ E.

Journal Of Peptide Science , cilt.24, ss.3083, 2018 (SCI-Expanded, Scopus)

31. An OMIC approach to elaborate the antibacterial mechanisms of different alkaloids

Avci F. G., SAYAR N. A., Akbulut B.

PHYTOCHEMISTRY , cilt.149, ss.123-131, 2018 (SCI-Expanded, Scopus)

32. Transcriptomic analysis displays the effect of (-)-roemerine on the motility and nutrient uptake in Escherichia coli

Ayyildiz D., ARĞA K. Y., Avci F. G., ALTINIŞIK KAYA F. E., Gurer C., Toplan G. G., et al.

CURRENT GENETICS , cilt.63, sa.4, ss.709-722, 2017 (SCI-Expanded, Scopus) Sürdürülebilir Kalkınma

33. Response of Escherichia coli to Prolonged Berberine Exposure

Gokgoz N. B., Avci F. G., Yoneten K. K., Alaybeyoglu B., ÖZKIRIMLI ÖLMEZ E., SAYAR N. A., et al.

MICROBIAL DRUG RESISTANCE , cilt.23, sa.5, ss.531-544, 2017 (SCI-Expanded, Scopus)

34. The effect of a beta-lactamase inhibitor peptide on bacterial membrane structure and integrity: a comparative study

Alaybeyoglu B., ULUOCAK B. B., SARIYAR AKBULUT B., ÖZKIRIMLI ÖLMEZ E.

JOURNAL OF PEPTIDE SCIENCE , cilt.23, sa.5, ss.374-383, 2017 (SCI-Expanded, Scopus)

35. An evolutionarily conserved allosteric site modulates beta-lactamase activity

Avci F. G., ALTINIŞIK KAYA F. E., Vardar Ulu D., ÖZKIRIMLI ÖLMEZ E., SARIYAR AKBULUT B.

JOURNAL OF ENZYME INHIBITION AND MEDICINAL CHEMISTRY , cilt.31, ss.33-40, 2016 (SCI-Expanded, Scopus)

36. Insights into membrane translocation of the cell-penetrating peptide pVEC from molecular dynamics calculations

Alaybeyoglu B., SARIYAR AKBULUT B., ÖZKIRIMLI ÖLMEZ E.

JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS , cilt.34, sa.11, ss.2387-2398, 2016 (SCI-Expanded, Scopus)

37. Proteomics Evidence for the Activity of the Putative Antibacterial Plant Alkaloid (-)-Roemerine: Mainstreaming Omics-Guided Drug Discovery

Gokgoz N. B., SARIYAR AKBULUT B.

OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY , cilt.19, sa.8, ss.478-489, 2015 (SCI-Expanded, Scopus)

38. Moderately Halophilic Bacterium Halomonas. sp. AAD12: A promising candidate as a Hydroxyectoine Producer

Öztürk H. Ü., Sarıyar Akbulut B., Ayan B., Poli A., Denizci A. A., Utkan G., et al.

J Microb Biochem Technol , cilt.7, ss.262-268, 2015 (Hakemli Dergi)

39. A novel chimeric peptide with antimicrobial activity

Alaybeyoglu B., SARIYAR AKBULUT B., ÖZKIRIMLI ÖLMEZ E.

JOURNAL OF PEPTIDE SCIENCE , cilt.21, sa.4, ss.294-301, 2015 (SCI-Expanded, Scopus) Sürdürülebilir Kalkınma

40. Investigation of the in vivo interaction between beta-lactamase and its inhibitor protein

Budeyri Gokgoz N., Yalaz S., Avci N. G., BULDUM G., ÖZKIRIMLI ÖLMEZ E., SARIYAR AKBULUT B.

TURKISH JOURNAL OF BIOLOGY , cilt.39, sa.3, ss.485-492, 2015 (SCI-Expanded, Scopus, TRDizin)

41. The importance of a conserved residue of the H10 helix in beta-lactamase

Avci F. G., ÖZKIRIMLI ÖLMEZ E., SARIYAR AKBULUT B.

NEW BIOTECHNOLOGY , cilt.31, 2014 (SCI-Expanded, Scopus)

42. Assessment of Berberine as a Multi-target Antimicrobial: A Multi-omics Study for Drug Discovery and Repositioning

Karaosmanoglu K., SAYAR N. A., KURNAZ I., SARIYAR AKBULUT B.

OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY , cilt.18, sa.1, ss.42-53, 2014 (SCI-Expanded, Scopus) Sürdürülebilir Kalkınma

43. Osmoadaptation of a moderately halophilic microorganisms under cold stress

Ayan B., SARIYAR AKBULUT B., Poli A., Ozturk U., Ozturk N. C., Denizci A. A., et al.

NEW BIOTECHNOLOGY , cilt.29, 2012 (SCI-Expanded, Scopus)

44. Adaptive changes in the lipid distribution of a moderately halophilic microorganism under salt stress

Ozturk H. U., Ozturk N. C., Poli A., Nicolaus B., Ayan B., Denizci A. A., et al.

NEW BIOTECHNOLOGY , cilt.29, 2012 (SCI-Expanded, Scopus)

45. Production of industrial enzymes for feed industry

Sogut M. S., Ozturk N. C., Ozturk H. U., Pinar O., Ipek F. M., Cayir E., et al.

NEW BIOTECHNOLOGY , cilt.29, 2012 (SCI-Expanded, Scopus)

46. Purification and characterization of a thermo and acid-stable endo-1,3-1,4-beta-glucanase from Bacillus amyliquefaciens YMNg47

DUMAN Y., KORKMAZ GÜVENMEZ H., ARIKAN B., DİNÇER S., Denizci A. A., SARIYAR AKBULUT B., et al.

NEW BIOTECHNOLOGY , cilt.29, 2012 (SCI-Expanded, Scopus)

47. Interplay of adaptive capabilities of Halomonas sp AAD12 under salt stress

Ceylan S., Yılan G., Sarıyar Akbulut B., Poli A., Kazan D.

JOURNAL OF BIOSCIENCE AND BIOENGINEERING , cilt.114, ss.45-52, 2012 (SCI-Expanded, Scopus)

48. Thermostable alpha-amylase from moderately halophilic Halomonas sp AAD21

Uzyol K. S., SARIYAR AKBULUT B., Denizci A. A., KAZAN D.

TURKISH JOURNAL OF BIOLOGY , cilt.36, sa.3, ss.327-338, 2012 (SCI-Expanded, Scopus, TRDizin)

49. Proteomic insight into phenolic adaptation of a moderately halophilic Halomonas sp strain AAD12

Ceylan S., SARIYAR AKBULUT B., Denizci A. A., Kazan D.

CANADIAN JOURNAL OF MICROBIOLOGY , cilt.57, sa.4, ss.295-302, 2011 (SCI-Expanded, Scopus)

50. Proteomic response of Escherichia coli to the alkaloid extract of Papaver polychaetum

Ozbalci C., Ünsal C., KAZAN D., SARIYAR AKBULUT B.

ANNALS OF MICROBIOLOGY , cilt.60, sa.4, ss.709-717, 2010 (SCI-Expanded, Scopus) Sürdürülebilir Kalkınma

51. Cellular distribution of activity for three enzymes with maltose binding protein as fusion partner and the structural implications

Utkur O. F., SARIYAR AKBULUT B., Hortacsu A.

TURKISH JOURNAL OF CHEMISTRY , cilt.34, sa.1, ss.1-13, 2010 (SCI-Expanded, Scopus, TRDizin)

52. Dynamic Analysis of Beta-lactamase Ligand Recognition

Kanlikilicer P., Budeyri N., SARIYAR AKBULUT B., Hortacsu A., ÖZKIRIMLI ÖLMEZ E.

BIOPHYSICAL JOURNAL , cilt.96, sa.3, 2009 (SCI-Expanded, Scopus)

53. Rapid differentiation of new isolates with MALDI TOF mass spectrometry via discriminant function analysis based on principal components

SARIYAR AKBULUT B.

Korean J. Chem. Eng. , cilt.26, ss.1645-1651, 2009 (SCI-Expanded)

54. Discriminant Function Analysis Based on Principal ComponentsforRapid Discrimination of Metabolic Capabilities of New Isolates

SARIYAR AKBULUT B.

Chem. Biochem. Eng. Q. , cilt.24, ss.119-127, 2009 (SCI-Expanded)

55. Preliminary phenotypic characterization of newly isolated halophilic microorganisms by footprinting: a rapid metabolome analysis

Sariyar-Akbulut B., Salman-Dilgimen A., Ceylan S., Perk S., Denizci A. A., Kazan D.

ARCHIVES OF MICROBIOLOGY , cilt.189, sa.1, ss.19-26, 2008 (SCI-Expanded, Scopus)

56. Monte Carlo sampling and principal component analysis of flux distributions yield topological and modular information on metabolic networks

Sariyar B., Perk S., Akman U., Hortacsu A.

JOURNAL OF THEORETICAL BIOLOGY , cilt.242, sa.2, ss.389-400, 2006 (SCI-Expanded, Scopus)

57. Metabolic flux analysis of recombinant protein overproduction in Escherichia coli

Özkan P., SARIYAR AKBULUT B., Ütkür Ö., AKMAN Ş. U., Hortacsu A.

Biochemical Engineering Journal , cilt.22, ss.167-195, 2005 (SCI-Expanded, Scopus)

58. Expression and translocation of glucose isomerase as a fusion protein in E coli

SARIYAR AKBULUT B., Özkan P., Kırdar B., Hortacsu A.

Enzyme And Microbial Technology , cilt.35, ss.105-112, 2004 (SCI-Expanded, Scopus)

59. Mathematical modelling of Sec pathway mechanism in Escherichia coli a case study for periplasmic translocation of maltose binding protein glucose isomerase fusion protein

SARIYAR AKBULUT B., Hortaçsu A.

Chemical Engineering Science , cilt.59, ss.1027-1038, 2004 (SCI-Expanded, Scopus)

60. Metabolic Engineering through Cofactor Manipulation and Its Effects on Metabolic Flux Redistribution in Escherichia coli

Ka Y. S., George N B., Susana J B., Ravi V V., YeaTyng Y., Horton E., et al.

Metabolic Engineering , cilt.4, ss.182-192, 2002 (SCI-Expanded, Scopus)

Kitaplar 4

1. Antibacterial and antifungal activities of isoquinoline alkaloids of the Papaveraceae and Fumariaceae families and their implications in structure–activity relationships

AVCI F. G., ATAŞ B., GÜLSOY TOPLAN G., GURER Ç., SARIYAR AKBULUT B.

Studies in Natural Products Chemistry, Atta-ur-Rahman, Editör, Elsevier, ss.87-118, 2021

Metrikler

Yayın

104

Yayın (WoS)

Yayın (Scopus)

Atıf (WoS)

544

H-İndeks (WoS)

Atıf (Scopus)

1047

H-İndeks (Scopus)

Atıf (Scholar)

165

H-İndeks (Scholar)

Atıf (Diğer Toplam)

Proje

Tez Danışmanlığı

Açık Erişim

BM Sürdürülebilir Kalkınma Amaçları

SDG 6: AMAÇ 6: TEMİZ SU VE SIHHİ KOŞULLAR

SDG 7: AMAÇ 7: ERİŞİLEBİLİR VE TEMİZ ENERJİ

SDG 8: AMAÇ 8: İNSANA YAKIŞIR İŞ VE EKONOMİK BÜYÜME

SDG 9: AMAÇ 9: SANAYİ, YENİLİKÇİLİK VE ALTYAPI

SDG 12: AMAÇ 12: SORUMLU ÜRETİM VE TÜKETİM

Yayınlar & Eserler

Yayın

Yayın (WoS)

Yayın (Scopus)

Atıf (WoS)

H-İndeks (WoS)

Atıf (Scopus)

H-İndeks (Scopus)

Atıf (Scholar)

H-İndeks (Scholar)

Atıf (Diğer Toplam)

Proje

Tez Danışmanlığı

Açık Erişim