Publications & Works

Publication Network

Published journal articles indexed by SCI, SSCI, and AHCI

Piperidine-based natural products targeting Type IV pili antivirulence: A computational approach

Ozcan A., Keskin O., Sariyar Akbulut B., Özbek Sarica P.
JOURNAL OF MOLECULAR GRAPHICS & MODELLING, vol.119, 2023 (SCI-Expanded) identifier identifier identifier

Metabolic engineering of Corynebacterium glutamicum for L-tyrosine production from glucose and xylose

Kurpejović E., Burgardt A., Bastem G. M., Junker N., Wendisch V. F., SARIYAR AKBULUT B.
Journal of Biotechnology, vol.363, pp.8-16, 2023 (SCI-Expanded) identifier identifier

Valorization of hazelnut husk as a carbon source for L-DOPA production with Corynebacterium glutamicum

Pakalın B., Kurpejović E., Bastem G. M., SAYAR N. A., Wendisch V. F., Akbulut B.
Biochemical Engineering Journal, vol.190, 2023 (SCI-Expanded) identifier identifier

Can DapC be the missing aminotransferease in the arogenate route of L-tyrosine biosynthesis in Corynebacterium glutamicum?

ALTINIŞIK KAYA F. E., Kurpejovic E., Burgardt A., Wendisch V. F., SARIYAR AKBULUT B.
FEBS OPEN BIO, vol.12, pp.180-181, 2022 (SCI-Expanded) identifier

A review on the mechanistic details of OXA enzymes of ESKAPE pathogens

Avci F. G., Tastekil I., Jaisi A., ÖZBEK SARICA P., SARIYAR AKBULUT B.
PATHOGENS AND GLOBAL HEALTH, 2022 (SCI-Expanded) identifier identifier identifier

Curcumin Displays Enhanced Solubility and Antibacterial Activities When Complexed with the Cell Penetrating Peptide pVEC

Koleoglu E., Acar T., DERMAN S., SARIYAR AKBULUT B.
INTERNATIONAL JOURNAL OF PEPTIDE RESEARCH AND THERAPEUTICS, vol.28, no.4, 2022 (SCI-Expanded) identifier identifier

Carvacrol Enhances the Antimicrobial Potency of Berberine in Bacillus subtilis

Atas B., Aksoy C. S., Avci F. G., SAYAR N. A., Ulgen K., ÖZKIRIMLI ÖLMEZ E., et al.
CURRENT MICROBIOLOGY, vol.79, no.5, 2022 (SCI-Expanded) identifier identifier identifier

Tyrosinase-based production of L-DOPA by Corynebacterium glutamicum

Kurpejovic E., Wendisch V. F., SARIYAR AKBULUT B.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY, vol.105, no.24, pp.9103-9111, 2021 (SCI-Expanded) Sustainable Development identifier identifier identifier

Live Cell Imaging of Peptide Uptake Using a Microfluidic Platform

Yuce M., ÖZKIRIMLI ÖLMEZ E., SARIYAR AKBULUT B., Ulgen K.
INTERNATIONAL JOURNAL OF PEPTIDE RESEARCH AND THERAPEUTICS, vol.27, pp.2003-2013, 2021 (SCI-Expanded) identifier identifier

Potentiating the activity of berberine for Staphylococcus aureus in a combinatorial treatment with thymol

Aksoy C. S., Avci F. G., Ugurel O. M., Atas B., SAYAR N. A., Akbulut B.
MICROBIAL PATHOGENESIS, vol.149, 2020 (SCI-Expanded) identifier identifier identifier

Identification of novel inhibitors of the ABC transporter BmrA

Serçinoğlu O., Senturk D., Altinisik K., Avci F., Frlan R., Tomašič T., et al.
BIOORGANIC CHEMISTRY, vol.105, 2020 (SCI-Expanded) identifier identifier identifier

Repurposing bioactive aporphine alkaloids as efflux pump inhibitors

Avci F. G., Atas B., Aksoy C. S., Kurpejovic E., Toplan G. G., GÜRER Ç., et al.
FITOTERAPIA, vol.139, 2019 (SCI-Expanded) identifier identifier identifier

Techno-economic analysis of caffeine and catechins production from black tea waste

SAYAR N. A., DURMAZ ŞAM S., PİNAR O., Serper D., SARIYAR AKBULUT B., KAZAN D., et al.
Food And Bioproducts Processing, vol.118, pp.1-12, 2019 (SCI-Expanded) identifier identifier

A method for the quantitative determination of glycerophospholipid regioisomers by UPLC-ESI-MS/MS

Wozny K., Lehmann W. D., Wozny M., SARIYAR AKBULUT B., Bruegger B.
ANALYTICAL AND BIOANALYTICAL CHEMISTRY, vol.411, no.4, pp.915-924, 2019 (SCI-Expanded) identifier identifier identifier

What Are the Multi-Omics Mechanisms for Adaptation by Microorganisms to High Alkalinity? A Transcriptomic and Proteomic Study of a Bacillus Strain with Industrial Potential

ALTINIŞIK KAYA F. E., Avci F. G., SAYAR N. A., KAZAN D., SAYAR A. A., SARIYAR AKBULUT B.
OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY, vol.22, no.11, pp.717-732, 2018 (SCI-Expanded) Sustainable Development identifier identifier identifier

Retro-techno-economic evaluation of acetic acid production using cotton stalk as feedstock

SAYAR N. A., KAZAN D., PİNAR O., SARIYAR AKBULUT B., SAYAR A. A.
JOURNAL OF MATERIAL CYCLES AND WASTE MANAGEMENT, vol.20, no.4, pp.2077-2088, 2018 (SCI-Expanded) Sustainable Development identifier identifier

Membrane Active Peptides and Their Biophysical Characterization

Avci F. G., SARIYAR AKBULUT B., ÖZKIRIMLI ÖLMEZ E.
BIOMOLECULES, vol.8, no.3, 2018 (SCI-Expanded) identifier identifier identifier

Targeting a hidden site on class A beta-lactamases

Avci F. G., ALTINIŞIK KAYA F. E., Karacan I., Karagoz D. S., Ersahin S., Eren A., et al.
JOURNAL OF MOLECULAR GRAPHICS & MODELLING, vol.84, pp.125-133, 2018 (SCI-Expanded) identifier identifier identifier

pVEC hydrophobic N-terminus is critical for antibacterial activity

ALAYBEYOĞLU B., SARIYAR AKBULUT B., ÖZKIRIMLI ÖLMEZ E.
Journal Of Peptide Science, vol.24, pp.3083, 2018 (SCI-Expanded) identifier identifier identifier

An OMIC approach to elaborate the antibacterial mechanisms of different alkaloids

Avci F. G., SAYAR N. A., Akbulut B.
PHYTOCHEMISTRY, vol.149, pp.123-131, 2018 (SCI-Expanded) identifier identifier identifier

Transcriptomic analysis displays the effect of (-)-roemerine on the motility and nutrient uptake in Escherichia coli

Ayyildiz D., ARĞA K. Y., Avci F. G., ALTINIŞIK KAYA F. E., Gurer C., Toplan G. G., et al.
CURRENT GENETICS, vol.63, no.4, pp.709-722, 2017 (SCI-Expanded) Sustainable Development identifier identifier identifier

Response of Escherichia coli to Prolonged Berberine Exposure

Gokgoz N. B., Avci F. G., Yoneten K. K., Alaybeyoglu B., ÖZKIRIMLI ÖLMEZ E., SAYAR N. A., et al.
MICROBIAL DRUG RESISTANCE, vol.23, no.5, pp.531-544, 2017 (SCI-Expanded) identifier identifier identifier

The effect of a beta-lactamase inhibitor peptide on bacterial membrane structure and integrity: a comparative study

Alaybeyoglu B., ULUOCAK B. B., SARIYAR AKBULUT B., ÖZKIRIMLI ÖLMEZ E.
JOURNAL OF PEPTIDE SCIENCE, vol.23, no.5, pp.374-383, 2017 (SCI-Expanded) identifier identifier identifier

An evolutionarily conserved allosteric site modulates beta-lactamase activity

Avci F. G., ALTINIŞIK KAYA F. E., Vardar Ulu D., ÖZKIRIMLI ÖLMEZ E., SARIYAR AKBULUT B.
JOURNAL OF ENZYME INHIBITION AND MEDICINAL CHEMISTRY, vol.31, pp.33-40, 2016 (SCI-Expanded) identifier identifier identifier

Insights into membrane translocation of the cell-penetrating peptide pVEC from molecular dynamics calculations

Alaybeyoglu B., SARIYAR AKBULUT B., ÖZKIRIMLI ÖLMEZ E.
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, vol.34, no.11, pp.2387-2398, 2016 (SCI-Expanded) identifier identifier identifier

Proteomics Evidence for the Activity of the Putative Antibacterial Plant Alkaloid (-)-Roemerine: Mainstreaming Omics-Guided Drug Discovery

Gokgoz N. B., SARIYAR AKBULUT B.
OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY, vol.19, no.8, pp.478-489, 2015 (SCI-Expanded) identifier identifier identifier

A novel chimeric peptide with antimicrobial activity

Alaybeyoglu B., SARIYAR AKBULUT B., ÖZKIRIMLI ÖLMEZ E.
JOURNAL OF PEPTIDE SCIENCE, vol.21, no.4, pp.294-301, 2015 (SCI-Expanded) Sustainable Development identifier identifier identifier

Investigation of the in vivo interaction between beta-lactamase and its inhibitor protein

Budeyri Gokgoz N., Yalaz S., Avci N. G., BULDUM G., ÖZKIRIMLI ÖLMEZ E., SARIYAR AKBULUT B.
TURKISH JOURNAL OF BIOLOGY, vol.39, no.3, pp.485-492, 2015 (SCI-Expanded) identifier identifier

The importance of a conserved residue of the H10 helix in beta-lactamase

Avci F. G., ÖZKIRIMLI ÖLMEZ E., SARIYAR AKBULUT B.
NEW BIOTECHNOLOGY, vol.31, 2014 (SCI-Expanded) identifier

Assessment of Berberine as a Multi-target Antimicrobial: A Multi-omics Study for Drug Discovery and Repositioning

Karaosmanoglu K., SAYAR N. A., KURNAZ I., SARIYAR AKBULUT B.
OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY, vol.18, no.1, pp.42-53, 2014 (SCI-Expanded) Sustainable Development identifier

Adaptive changes in the lipid distribution of a moderately halophilic microorganism under salt stress

Ozturk H. U., Ozturk N. C., Poli A., Nicolaus B., Ayan B., Denizci A. A., et al.
NEW BIOTECHNOLOGY, vol.29, 2012 (SCI-Expanded) identifier

Purification and characterization of a thermo and acid-stable endo-1,3-1,4-beta-glucanase from Bacillus amyliquefaciens YMNg47

DUMAN Y., KORKMAZ GÜVENMEZ H., ARIKAN B., DİNÇER S., Denizci A. A., SARIYAR AKBULUT B., et al.
NEW BIOTECHNOLOGY, vol.29, 2012 (SCI-Expanded) identifier

Osmoadaptation of a moderately halophilic microorganisms under cold stress

Ayan B., SARIYAR AKBULUT B., Poli A., Ozturk U., Ozturk N. C., Denizci A. A., et al.
NEW BIOTECHNOLOGY, vol.29, 2012 (SCI-Expanded) identifier

Production of industrial enzymes for feed industry

Sogut M. S., Ozturk N. C., Ozturk H. U., Pinar O., Ipek F. M., Cayir E., et al.
NEW BIOTECHNOLOGY, vol.29, 2012 (SCI-Expanded) identifier

Interplay of adaptive capabilities of Halomonas sp AAD12 under salt stress

Ceylan S., Yılan G., Sarıyar Akbulut B., Poli A., Kazan D.
JOURNAL OF BIOSCIENCE AND BIOENGINEERING, vol.114, pp.45-52, 2012 (SCI-Expanded) identifier identifier identifier

Thermostable alpha-amylase from moderately halophilic Halomonas sp AAD21

Uzyol K. S., SARIYAR AKBULUT B., Denizci A. A., KAZAN D.
TURKISH JOURNAL OF BIOLOGY, vol.36, no.3, pp.327-338, 2012 (SCI-Expanded) identifier identifier

Proteomic insight into phenolic adaptation of a moderately halophilic Halomonas sp strain AAD12

Ceylan S., SARIYAR AKBULUT B., Denizci A. A., Kazan D.
CANADIAN JOURNAL OF MICROBIOLOGY, vol.57, no.4, pp.295-302, 2011 (SCI-Expanded) identifier identifier identifier

Proteomic response of Escherichia coli to the alkaloid extract of Papaver polychaetum

Ozbalci C., Ünsal C., KAZAN D., SARIYAR AKBULUT B.
ANNALS OF MICROBIOLOGY, vol.60, no.4, pp.709-717, 2010 (SCI-Expanded) Sustainable Development identifier identifier

Cellular distribution of activity for three enzymes with maltose binding protein as fusion partner and the structural implications

Utkur O. F., SARIYAR AKBULUT B., Hortacsu A.
TURKISH JOURNAL OF CHEMISTRY, vol.34, no.1, pp.1-13, 2010 (SCI-Expanded) identifier identifier

Dynamic Analysis of Beta-lactamase Ligand Recognition

Kanlikilicer P., Budeyri N., SARIYAR AKBULUT B., Hortacsu A., ÖZKIRIMLI ÖLMEZ E.
BIOPHYSICAL JOURNAL, vol.96, no.3, 2009 (SCI-Expanded) identifier

Discriminant Function Analysis Based on Principal ComponentsforRapid Discrimination of Metabolic Capabilities of New Isolates

SARIYAR AKBULUT B.
Chem. Biochem. Eng. Q., vol.24, pp.119-127, 2009 (SCI-Expanded)

Rapid differentiation of new isolates with MALDI TOF mass spectrometry via discriminant function analysis based on principal components

SARIYAR AKBULUT B.
Korean J. Chem. Eng., vol.26, pp.1645-1651, 2009 (SCI-Expanded) identifier identifier

Preliminary phenotypic characterization of newly isolated halophilic microorganisms by footprinting: a rapid metabolome analysis

Sariyar-Akbulut B., Salman-Dilgimen A., Ceylan S., Perk S., Denizci A. A., Kazan D.
ARCHIVES OF MICROBIOLOGY, vol.189, no.1, pp.19-26, 2008 (SCI-Expanded) identifier identifier identifier

Monte Carlo sampling and principal component analysis of flux distributions yield topological and modular information on metabolic networks

Sariyar B., Perk S., Akman U., Hortacsu A.
JOURNAL OF THEORETICAL BIOLOGY, vol.242, no.2, pp.389-400, 2006 (SCI-Expanded) identifier identifier identifier

Metabolic flux analysis of recombinant protein overproduction in Escherichia coli

Özkan P., SARIYAR AKBULUT B., Ütkür Ö., AKMAN Ş. U., Hortacsu A.
Biochemical Engineering Journal, vol.22, pp.167-195, 2005 (SCI-Expanded) identifier identifier

Expression and translocation of glucose isomerase as a fusion protein in E coli

SARIYAR AKBULUT B., Özkan P., Kırdar B., Hortacsu A.
Enzyme And Microbial Technology, vol.35, pp.105-112, 2004 (SCI-Expanded) identifier identifier

Mathematical modelling of Sec pathway mechanism in Escherichia coli a case study for periplasmic translocation of maltose binding protein glucose isomerase fusion protein

SARIYAR AKBULUT B., Hortaçsu A.
Chemical Engineering Science, vol.59, pp.1027-1038, 2004 (SCI-Expanded) identifier identifier

Metabolic Engineering through Cofactor Manipulation and Its Effects on Metabolic Flux Redistribution in Escherichia coli

Ka Y. S., George N B., Susana J B., Ravi V V., YeaTyng Y., Horton E., et al.
Metabolic Engineering, vol.4, pp.182-192, 2002 (SCI-Expanded) identifier identifier identifier

Articles Published in Other Journals

Curvularia lunata: A fungus for possible berberine transformation

Yılmaz D., AVCI F. G., SARIYAR AKBULUT B.
International Journal of Secondary Metabolite, vol.9, no.1, pp.66-73, 2022 (Scopus) identifier

Moderately Halophilic Bacterium Halomonas. sp. AAD12: A promising candidate as a Hydroxyectoine Producer

Öztürk H. Ü., Sarıyar Akbulut B., Ayan B., Poli A., Denizci A. A., Utkan G., et al.
J Microb Biochem Technol, vol.7, pp.262-268, 2015 (Peer-Reviewed Journal)

Books & Book Chapters

Antibacterial and antifungal activities of isoquinoline alkaloids of the Papaveraceae and Fumariaceae families and their implications in structure–activity relationships

AVCI F. G., ATAŞ B., GÜLSOY TOPLAN G., GURER Ç., SARIYAR AKBULUT B.
in: Studies in Natural Products Chemistry, Atta-ur-Rahman, Editor, Elsevier, pp.87-118, 2021

Antibiyotik Üretimi

Avci F. G., Sayar N. A., Sariyar Akbulut B.
in: Fermente Ürünler Teknolojisi ve Mikrobiyolojisi, Erkmen,Osman; Erten,Hüseyin,Sağlam,Hidayet, Editor, Nobel Akademik Yayıncılık, Ankara, pp.721-738, 2020

Protein İzolasyonu ve Analizi

Sarıyar Akbulut B., Kazan D.
in: Moleküler Üroloji, Türkeriü L.N.,Özer,Aç,Narter,F, Editor, Pelin Offset, Ankara, pp.583-597, 2012

Protein-Peptide Interactions Revolutionize Drug Development

Sarıyar Akbulut B., Özkırımlı Ölmez E.
in: Binding Protein, Ktob Abdelmohsen, Editor, InTech, Rijeka, pp.49-72, 2012