Yayınlar & Eserler

SCI, SSCI ve AHCI İndekslerine Giren Dergilerde Yayınlanan Makaleler

Revisiting allostery in CREB-binding protein (CBP) using residue-based interaction energy

JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN, cilt.34, sa.9, ss.965-974, 2020 (SCI İndekslerine Giren Dergi) identifier identifier identifier

How Do Mutations and Allosteric Inhibitors Modulate Caspase-7 Activity? A Molecular Dynamics Study

Journal Of Biomolecular Structure & Dynamics, cilt.37, sa.13, ss.3456-3466, 2019 (SCI İndekslerine Giren Dergi) identifier

Dynamic characterization of HLA-B*44 Alleles: A comparative molecular dynamics simulation study

COMPUTATIONAL BIOLOGY AND CHEMISTRY, cilt.62, ss.12-16, 2016 (SCI İndekslerine Giren Dergi) identifier identifier identifier

Hot Spots in a Network of Functional Sites

PLOS ONE, cilt.8, sa.9, 2013 (SCI İndekslerine Giren Dergi) identifier identifier identifier

Community wide assessment of protein interface modeling suggests improvements to design methodology

Journal Of Molecular Biology, cilt.414, ss.289-302, 2011 (SCI Expanded İndekslerine Giren Dergi) identifier identifier identifier

Fracture mechanics analysis of arc shaped specimens for pipe grade polymers

Polymer Testing, cilt.28, ss.357-361, 2009 (SCI Expanded İndekslerine Giren Dergi) identifier identifier

Uniaxial tensile properties underlying plane stress rapid fracture resistance in polyethylene

Polymer Engineering And Science, cilt.48, ss.1855-1861, 2008 (SCI Expanded İndekslerine Giren Dergi) identifier identifier

Diğer Dergilerde Yayınlanan Makaleler

HLA Moleküllerinde Peptit Ligandlarının Kompleks Stabilitesine Olan Etkisinin Araştırılması

International journal of advances in engineering and pure sciences (Online), cilt.30, 2018 (Diğer Kurumların Hakemli Dergileri)

HLA Proteinlerinin GNM Metodu ile Dinamik Karakterizasyonu

Dokuz Eylül Üniversitesi Mühendislik Fakültesi Fen ve Mühendislik Dergisi, cilt.20, ss.376-399, 2018 (Diğer Kurumların Hakemli Dergileri)

Protein dynamics

Sigma Mühendislik ve Fen Bilimleri Dergisi, cilt.27, ss.161-170, 2009 (Diğer Kurumların Hakemli Dergileri)

Plane stress rapid fracture resistance of pipe grade PE Estimation from tensile drawing data

ANTEC Conference Proceedings, cilt.5, ss.2880-2884, 2007 (Diğer Kurumların Hakemli Dergileri)

Hakemli Kongre / Sempozyum Bildiri Kitaplarında Yer Alan Yayınlar

Exploring dynamics of pMHCusing accelerated molecular dynamics

7th International Bahçeşehir University (BAU) Drug Design Congress, 19 - 21 Aralık 2019

Exploring dynamics of pMHCusing accelerated molecular dynamics

7th International Bahçeşehir University (BAU) Drug Design Congress, 19 - 21 Aralık 2019

Identification of allostery in CREB-Binding Protein via using pairwiseresidue interaction energy method

7th International Bahçeşehir University (BAU) Drug Design Congress, 19 - 21 Aralık 2019

VIRTUAL SCREENING FOR INHIBITORS OF THE BmrA PUMP

HIBIT 2018 11TH INTERNATIONAL SYMPOSIUM ON HEALTH INFORMATICS AND BIOINFORMATICS, 25 - 27 Ekim 2018

Comparison of computational allosteric pathwayidentification methods

International conference on applied mathematics, modeling and Life Sciences, 3 - 05 Ekim 2018

Biophysical basis of MHC Class I polymorphism

International conference on applied mathematics, modeling and Life Sciences, 3 - 05 Ekim 2018

Investigation of catalytic loop motions and global dynamics ofcaspase- 7 structures

International conference on applied mathematics, modeling and Life Sciences, 3 - 05 Ekim 2018

Understanding the dynamic natureof proteins using molecular dynamics (MD)simulations

International conference on applied mathematics, modeling and Life Sciences, 3 - 05 Ekim 2018

Computational Approaches to the Investigation ofPeptide-MHC Complex Stability

International conference on applied mathematics, modeling and Life Sciences, 3 - 05 Ekim 2018

Development of a web-based tool for network analysis of protein structures

International conference on applied mathematics, modeling and Life Sciences, 3 - 05 Ekim 2018

Quantifying Peptide Binding Affinities from Non-equilibrium Work

62nd Annual Meeting of the Biophysical-Society, San-Francisco, Kostarika, 17 - 21 Şubat 2018, cilt.114 identifier

Effect of temperature on the molecular dynamics simulations of HLA-A 02 alleles,

International Symposium on Chemistry via Computation Applications on Molecular Nanoscience, 30 Ekim 2017

Construction of allosteric residue networks in caspase-7 using energy perturbation responses

International Symposium on Chemistry via Computation Applications on Molecular Nanoscience, 30 Ekim 2017

Exploration of allosteric paths in caspase molecules using energy dissipation

41st FEBS Congress on Molecular and Systems Biology for a Better Life, Kusadasi, Türkiye, 3 - 08 Eylül 2016, cilt.283, ss.235 identifier

Allelic modulation of global dynamics of HLA B 27 05 and HLA B 27 09 molecules

13th Greta Pifat Mrzljak International School of Biophysics, 1 - 10 Eylül 2016

Investigating dynamics of HLA molecules by energy dissipation

Biophysical Society 60th Annual Meeting, Los-Angeles, Amerika Birleşik Devletleri, 27 Şubat - 02 Mart 2016

Investigating Dynamics of HLA Molecules by Energy Dissipation

60th Annual Meeting of the Biophysical-Society, Los-Angeles, Şili, 27 Şubat - 02 Mart 2016, cilt.110 identifier

Computational study on the binding behaviour of HLA B44 alleles

3rd International BAU-Drug Design Congress, Istanbul, 1 - 03 Ekim 2015

Computational investigation of protein dynamics based on energy dissipation

3rd International BAU-Drug Design Congress, Istanbul, 1 - 03 Ekim 2015

Computational study on the binding behaviour of HLA-B27 alleles at varying pH conditions

10th European-Biophysical-Societies-Association (EBSA) European Biophysics Congress, Dresden, Almanya, 18 - 22 Temmuz 2015, cilt.44 identifier

Peptide-dependent binding-stabilization effect of beta 2m on HLA B27 alleles: A computational study

10th European-Biophysical-Societies-Association (EBSA) European Biophysics Congress, Dresden, Almanya, 18 - 22 Temmuz 2015, cilt.44 identifier

Comparison of the binding behavior of HLA B alleles related to ankylosing spondylitis disease by computational methods

Modeling of Biomolecular Systems Interactions, Dynamics, and Allostery: Bridging Experiments and Computations, 10 - 14 Eylül 2014

Computational investigation of the energy exchange pathways in peptide loaded major histocompatibility complex proteins

Modeling of Biomolecular Systems Interactions, Dynamics, and Allostery: Bridging Experiments and Computations, 10 - 14 Eylül 2014

Comparative study of functional dynamics in mutant von hippel lindau tumor suppressor protein structures

Modeling of Biomolecular Systems Interactions, Dynamics, and Allostery: Bridging Experiments and Computations, Istanbul, Turkey, September 10-14, 2014, 10 - 14 Eylül 2014, ss.92

Computational study on the effect of pH on the binding behaviour of HLA B alleles

ECCB’xx14, the 13th European Conference on Computational Biology, 7 - 10 Eylül 2014

The intrinsic dynamics of partner chains aid in the detection of native complexes amongst docking decoys

Computational Biophysics Workshop, University of Pittsburgh, 10 - 14 Haziran 2013

Dynamics predefine protein binding

Chemical Physics Congress-IX Izmir, İzmir, Türkiye, 14 - 16 Ekim 2010

The origins of polyethylenes resistance to rapid plane stress rupture

5th ESIS TC4 Conference on Fracture of Polymers, Composites and Adhesives, 7 - 11 Eylül 2008

Kitap & Kitap Bölümleri

In Silico Databases and Tools for Drug Repurposing

In Silico Drug Design, Kunal Roy, Editör, Elsevier Science, Oxford/Amsterdam , London, ss.703-743, 2019