Yayınlar & Eserler

Yayın Ağı

SCI, SSCI ve AHCI İndekslerine Giren Dergilerde Yayınlanan Makaleler

Polymorphism in F pocket affects peptide selection and stability of type 1 diabetes-associated HLA-B39 allotypes.

Amarajeewa A. W. P., Özcan A., Mukhtiar A., Ren X., Wang Q., Ozbek P., et al.
European journal of immunology , cilt.54, sa.6, 2024 (SCI-Expanded) Sürdürülebilir Kalkınma identifier identifier

Attenuation of Type IV pili activity by natural products

Yalkut K., Ben Ali Hassine S., Basaran E., KULA C., Ozcan A., Avci F. G., et al.
Journal of Biomolecular Structure and Dynamics , 2024 (SCI-Expanded) identifier identifier

Piperidine-based natural products targeting Type IV pili antivirulence: A computational approach

Ozcan A., Keskin O., Sariyar Akbulut B., Özbek Sarica P.
JOURNAL OF MOLECULAR GRAPHICS & MODELLING , cilt.119, 2023 (SCI-Expanded) identifier identifier identifier

A review on the mechanistic details of OXA enzymes of ESKAPE pathogens

Avci F. G., Tastekil I., Jaisi A., ÖZBEK SARICA P., SARIYAR AKBULUT B.
PATHOGENS AND GLOBAL HEALTH , cilt.117, sa.3, ss.219-234, 2023 (SCI-Expanded) identifier identifier identifier

Epistatic effects between amino acid insertions and substitutions mediate toxin-resistance of vertebrate Na+, K+-ATPases

Mohammadi S., Özdemir H. I., Özbek Sarica P., Sumbul F., Stiller J., Deng Y., et al.
MOLECULAR BIOLOGY AND EVOLUTION , cilt.1, sa.1, ss.100-102, 2022 (SCI-Expanded) identifier identifier identifier

How Epstein-Barr virus envelope glycoprotein gp350 tricks the CR2? A molecular dynamics study

Bingöl E. N., Taştekil I., Yay C., Keskin N., ÖZBEK SARICA P.
Journal of Molecular Graphics and Modelling , cilt.114, 2022 (SCI-Expanded) Sürdürülebilir Kalkınma identifier identifier identifier

Assessment of 13 in silico pathogenicity methods on cancer-related variants

Yazar M., ÖZBEK SARICA P.
Computers in Biology and Medicine , cilt.145, 2022 (SCI-Expanded) Sürdürülebilir Kalkınma identifier identifier identifier

Exploring the recognition differences of peptides in TCR-pMHC complex

Bingol E. N., Özbek Sarica P.
BIOPHYSICAL JOURNAL , cilt.121, sa.3, 2022 (SCI-Expanded) identifier

Hydration modulates oxygen channel residues for oxygenation of cysteine dioxygenase: Perspectives from molecular dynamics simulations

Tariq M., Özbek Sarica P., Moin S. T.
JOURNAL OF MOLECULAR GRAPHICS & MODELLING , cilt.110, 2022 (SCI-Expanded) identifier identifier identifier

Systems biomarkers for papillary thyroid cancer prognosis and treatment through multi-omics networks

Gulfidan G., Soylu M., Demirel D., Erdonmez H. B. C., Beklen H., ÖZBEK SARICA P., et al.
ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS , cilt.715, 2022 (SCI-Expanded) Sürdürülebilir Kalkınma identifier identifier identifier

Unraveling the Allosteric Communication Mechanisms in T-Cell Receptor-Peptide-Loaded Major Histocompatibility Complex Dynamics Using Molecular Dynamics Simulations: An Approach Based on Dynamic Cross Correlation Maps and Residue Interaction Energy Calculations

Bingol E. N., Sercinoglu O., Özbek Sarica P.
JOURNAL OF CHEMICAL INFORMATION AND MODELING , cilt.61, sa.5, ss.2444-2453, 2021 (SCI-Expanded) Sürdürülebilir Kalkınma identifier identifier identifier

In SilicoTools and Approaches for the Prediction of Functional and Structural Effects of Single-Nucleotide Polymorphisms on Proteins: An Expert Review

Yazar M., ÖZBEK SARICA P.
OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY , cilt.25, ss.23-37, 2021 (SCI-Expanded) Sürdürülebilir Kalkınma identifier identifier identifier

Identification of novel inhibitors of the ABC transporter BmrA

Serçinoğlu O., Senturk D., Altinisik K., Avci F., Frlan R., Tomašič T., et al.
BIOORGANIC CHEMISTRY , cilt.105, 2020 (SCI-Expanded) identifier identifier identifier

Revisiting allostery in CREB-binding protein (CBP) using residue-based interaction energy

Yazar M., Ozbek P.
JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN , cilt.34, sa.9, ss.965-974, 2020 (SCI-Expanded) identifier identifier identifier

Sequence-structure-function relationships in class I MHC: A local frustration perspective

Serçinoğlu O., Ozbek P.
PLOS ONE , cilt.15, sa.5, 2020 (SCI-Expanded) identifier identifier identifier

New Machine Learning Applications to Accelerate Personalized Medicine in Breast Cancer: Rise of the Support Vector Machines

Ozer M. E., Sarica P., ARĞA K. Y.
OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY , cilt.24, sa.5, ss.241-246, 2020 (SCI-Expanded) Sürdürülebilir Kalkınma identifier identifier identifier

Computational investigation of peptide binding stabilities of HLA-B*27 and HLA-B*44 alleles

Bunsuz A., SERÇİNOĞLU O., Ozbek P.
Computational Biology and Chemistry , cilt.84, 2020 (SCI-Expanded) identifier identifier identifier

Next-Generation Sequencing Identifies BRCA1 and/or BRCA2 Mutations in Women at High Hereditary Risk for Breast Cancer with Shorter Telomere Length

Peker E., Yenmiş G., Bingöl E., Yüksel Ş., Tokat F., Özbek P., et al.
OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY , cilt.24, sa.1, ss.5-15, 2020 (SCI-Expanded) Sürdürülebilir Kalkınma identifier identifier identifier

ProSNEx: a web-based application for exploration and analysis of protein structures using network formalism

Aydınkal R. M., Serçinoğlu O., Özbek Sarıca P.
Nucleic Acids Research , cilt.1, sa.1, 2019 (SCI-Expanded) identifier identifier identifier

How Do Mutations and Allosteric Inhibitors Modulate Caspase-7 Activity? A Molecular Dynamics Study

Bingol E. N., Serçinoğlu O., Özbek Sarıca P.
Journal Of Biomolecular Structure & Dynamics , cilt.37, sa.13, ss.3456-3466, 2019 (SCI-Expanded) Sürdürülebilir Kalkınma identifier identifier identifier

gRINN: a tool for calculation of residue interaction energies and protein energy network analysis of molecular dynamics simulations

Sercinoglu O., Özbek Sarıca P.
NUCLEIC ACIDS RESEARCH , cilt.46, 2018 (SCI-Expanded) identifier

Computational characterization of residue couplings and micropolymorphism-induced changes in the dynamics of two differentially disease-associated human MHC class-I alleles

Sercinoglu O., Özbek Sarıca P.
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS , cilt.36, ss.724-740, 2018 (SCI-Expanded) Sürdürülebilir Kalkınma identifier identifier identifier

A computational docking study on the pH dependence of peptide binding to HLA-B27 sub-types differentially associated with ankylosing spondylitis

Sercinoglu O., Ozcan G., Kabas Z. K., ÖZBEK SARICA P.
JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN , cilt.30, sa.7, ss.569-581, 2016 (SCI-Expanded) identifier identifier identifier

Dynamic characterization of HLA-B*44 Alleles: A comparative molecular dynamics simulation study

ÖZBEK SARICA P.
COMPUTATIONAL BIOLOGY AND CHEMISTRY , cilt.62, ss.12-16, 2016 (SCI-Expanded) Sürdürülebilir Kalkınma identifier identifier identifier

DynaFace: Discrimination between Obligatory and Non-obligatory Protein-Protein Interactions Based on the Complex's Dynamics

Soner S., ÖZBEK SARICA P., Garzon J. I., Ben-Tal N., HALİLOĞLU T.
PLOS COMPUTATIONAL BIOLOGY , cilt.11, sa.10, 2015 (SCI-Expanded) identifier

Hot Spots in a Network of Functional Sites

ÖZBEK SARICA P., Soner S., HALİLOĞLU T.
PLOS ONE , cilt.8, sa.9, 2013 (SCI-Expanded) identifier identifier identifier

Community wide assessment of protein interface modeling suggests improvements to design methodology

Sarel J F., Timothy A W., Strauch E., Corn J. E., Qin S., Zhou H., et al.
Journal Of Molecular Biology , cilt.414, ss.289-302, 2011 (SCI-Expanded) identifier identifier identifier

DNABINDPROT fluctuation based predictor of DNA binding residues within a network of interacting residues

Özbek Sarıca P., Soner S., Erman B., Haliloglu T.
Nucleic Acids Research , cilt.38, ss.417-423, 2010 (SCI-Expanded) identifier identifier identifier

Fracture mechanics analysis of arc shaped specimens for pipe grade polymers

ÖZBEK SARICA P., Argyrakis C., Leevers P.
Polymer Testing , cilt.28, ss.357-361, 2009 (SCI-Expanded) identifier identifier

Uniaxial tensile properties underlying plane stress rapid fracture resistance in polyethylene

ÖZBEK SARICA P., Leevers P.
Polymer Engineering And Science , cilt.48, ss.1855-1861, 2008 (SCI-Expanded) identifier identifier

Diğer Dergilerde Yayınlanan Makaleler

Differential Interactome Based Drug Repositioning Unraveled Abacavir, Exemestane, Nortriptyline Hydrochloride, and Tolcapone as Potential Therapeutics for Colorectal Cancers

beklen h., arslan s., Gulfidan G., Turanlı B., ÖZBEK SARICA P., Karademir Yılmaz B., et al.
Frontiers in Bioinformatics , cilt.1, 2021 (Hakemli Dergi) Sürdürülebilir Kalkınma identifier

HLA Moleküllerinde Peptit Ligandlarının Kompleks Stabilitesine Olan Etkisinin Araştırılması

Bunsuz A., Serçinoğlu O., Özbek Sarıca P.
International journal of advances in engineering and pure sciences (Online) , cilt.30, 2018 (Hakemli Dergi)

HLA Proteinlerinin GNM Metodu ile Dinamik Karakterizasyonu

SERÇİNOĞLU O., ÖZBEK SARICA P.
Dokuz Eylül Üniversitesi Mühendislik Fakültesi Fen ve Mühendislik Dergisi , cilt.20, sa.59, ss.376-399, 2018 (Hakemli Dergi) identifier

Protein dynamics

ÖZBEK SARICA P., Haliloglu T.
Sigma Mühendislik ve Fen Bilimleri Dergisi , cilt.27, ss.161-170, 2009 (Hakemli Dergi)

Plane stress rapid fracture resistance of pipe grade PE Estimation from tensile drawing data

ÖZBEK SARICA P., Leevers P. S.
ANTEC Conference Proceedings , cilt.5, ss.2880-2884, 2007 (Hakemli Dergi)

Hakemli Kongre / Sempozyum Bildiri Kitaplarında Yer Alan Yayınlar

Implications of Machine Learning Approaches in Cancer for Biomarker Discovery: Oversampling and Feature Selection

Soyer S. M., Özbek Sarica P., Kasavi C.
5th International Eurasian Conference on Science, Engineering and Technology (EurasianSciEnTech 2024), Ankara, Türkiye, 26 - 28 Haziran 2024

Differential Interactome Based Drug Repositioning Unraveled Potential Therapeutics for Colorectal Cancers

BEKLEN H., Arslan S., GULFİDAN G., TURANLI B., ÖZBEK SARICA P., YILMAZ B., et al.
3rd EURASIA BIOCHEMICAL APPROACHES & TECHNOLOGIES (EBAT) CONGRESS, Antalya, Türkiye, 4 - 07 Kasım 2021

New inhibitors of the BmrA pump identified through virtual screening

Senturk D., SERÇİNOĞLU O., ALTINIŞIK KAYA F. E., Frlan R., Tomasic T., AVCI F. G., et al.
MuTaLig COST ACTION CA15135 4th WG meeting, 05 Mart 2020

Exploring dynamics of pMHCusing accelerated molecular dynamics

Bingol E. N., ÖZBEK SARICA P.
7th International Bahçeşehir University (BAU) Drug Design Congress, 19 - 21 Aralık 2019

Identification of allostery in CREB-Binding Protein via using pairwiseresidue interaction energy method

YAZAR M., ÖZBEK SARICA P.
7th International Bahçeşehir University (BAU) Drug Design Congress, 19 - 21 Aralık 2019

A Tool for Investigating Protein Signaling Network by Perturbation of External Energy Dissipation

özer m. e., özdemir h. i., SERÇİNOĞLU O., Bingol E. N., ÖZBEK SARICA P.
7th International Bahçeşehir University (BAU) Drug Design Congress, 19 - 21 Aralık 2019

Ailesel Meme Kanseri Hastalarında BRCA1 ve BRCA2 Genlerinin Yeni Nesil Dizileme Yöntemi ile Dizilenmesi ve Telomer Uzunluğuyla İlişkisi

PEKER EYÜBOĞLU İ., YENMİŞ G., BİNGÖL E. N., YÜKSEL KILIÇTURGAY Ş., TOKAT F., ÖZBEK SARICA P., et al.
Tıbbi Biyoloji ve Genetik kongresi, Türkiye, 27 - 30 Ekim 2019 Sürdürülebilir Kalkınma

Determination Of Candidate Biomarkers Through Differential Interactome in Colorectal Adenocarcinoma

BEKLEN H., GULFİDAN G., TURANLI B., ÖZBEK SARICA P., YILMAZ B., ARĞA K. Y.
The 12th International Symposium on Health Informatics and Bioinformatics (HIBIT 2019), İzmir, Türkiye, 17 - 19 Ekim 2019

Comparative dynamical characterization of TCR and MHC molecules upon binding via molecular dynamics simulations

Bingol E. N., SERÇİNOĞLU O., ÖZBEK SARICA P.
ECOMB, 19 - 21 Eylül 2019

Comparison of allosteric pathway identification of CREB-binding protein using computational methods

YAZAR M., ÖZBEK SARICA P.
6th International BAU-Drug Design Congress, 13 - 15 Aralık 2018

Comparative Analysis of Two Binding Sites on The BmrA Efflux Pump

şentürk karagöz d., SERÇİNOĞLU O., ÖZBEK SARICA P., orelle c., Jault J., SARIYAR AKBULUT B.
6th International BAU-Drug Design Congress, Türkiye, 13 - 15 Aralık 2018

Protein Networks: Development of a web tool to analyze protein structural topology

aydınkal r. m., SERÇİNOĞLU O., ÖZBEK SARICA P.
6th International BAU-Drug Design Congress, 13 - 15 Aralık 2018

Dynamical characterization of TCRpMHC complex: A comparative molecular dynamics study

Bingol E. N., SERÇİNOĞLU O., ÖZBEK SARICA P.
6th International BAU-Drug Design Congress, 13 - 15 Aralık 2018

Biophysical Links Between Polymorphism, Stability and Peptide-Binding in the Major Histocompatibility Complex

SERÇİNOĞLU O., ÖZBEK SARICA P.
6th International BAU-Drug Design Congress, 13 - 15 Aralık 2018

VIRTUAL SCREENING FOR INHIBITORS OF THE BmrA PUMP

şentürk karagöz d., SERÇİNOĞLU O., SARIYAR AKBULUT B., ÖZBEK SARICA P., orelle c., jault j. m.
HIBIT 2018 11TH INTERNATIONAL SYMPOSIUM ON HEALTH INFORMATICS AND BIOINFORMATICS, 25 - 27 Ekim 2018

Biophysical basis of MHC Class I polymorphism

SERÇİNOĞLU O., ÖZBEK SARICA P.
International conference on applied mathematics, modeling and Life Sciences, 3 - 05 Ekim 2018

Development of a web-based tool for network analysis of protein structures

Aydınkal R. M., SERÇİNOĞLU O., ÖZBEK SARICA P.
International conference on applied mathematics, modeling and Life Sciences, 3 - 05 Ekim 2018

Computational Approaches to the Investigation ofPeptide-MHC Complex Stability

Bunsuz A., SERÇİNOĞLU O., ÖZBEK SARICA P.
International conference on applied mathematics, modeling and Life Sciences, 3 - 05 Ekim 2018

Comparison of computational allosteric pathwayidentification methods

YAZAR M., SERÇİNOĞLU O., ÖZBEK SARICA P.
International conference on applied mathematics, modeling and Life Sciences, 3 - 05 Ekim 2018

Investigation of catalytic loop motions and global dynamics ofcaspase- 7 structures

Bingöl E. N., SERÇİNOĞLU O., ÖZBEK SARICA P.
International conference on applied mathematics, modeling and Life Sciences, 3 - 05 Ekim 2018

Understanding the dynamic natureof proteins using molecular dynamics (MD)simulations

ÖZBEK SARICA P.
International conference on applied mathematics, modeling and Life Sciences, 3 - 05 Ekim 2018

Quantifying Peptide Binding Affinities from Non-equilibrium Work

Sercinoglu O., ÖZBEK SARICA P.
62nd Annual Meeting of the Biophysical-Society, San-Francisco, Kostarika, 17 - 21 Şubat 2018, cilt.114 identifier

Effect of temperature on the molecular dynamics simulations of HLA-A 02 alleles,

Bunsuz A., SERÇİNOĞLU O., ÖZBEK SARICA P.
International Symposium on Chemistry via Computation Applications on Molecular Nanoscience, 30 Ekim 2017

Construction of allosteric residue networks in caspase-7 using energy perturbation responses

Bingol E. N., SERÇİNOĞLU O., ÖZBEK SARICA P.
International Symposium on Chemistry via Computation Applications on Molecular Nanoscience, 30 Ekim 2017

A Software Tool for Parallel Computation and Characterization of Residue Interaction Energies from Molecular Dynamics Simulations

SERÇİNOĞLU O., ÖZBEK SARICA P.
International Symposium on Chemistry via Computation Applications on Molecular Nanoscience, 30 Ekim 2017

Immunogenic Peptide - HLA-A 02:01 Complexes Studied by Comparative Molecular Dynamics Simulation

Bunsuz A., SERÇİNOĞLU O., ÖZBEK SARICA P.
5th International BAU-Drug Design Congress, 19 - 21 Ekim 2017

Steered Molecular Dynamics Simulation for Efficient Ranking of Peptide - MHC Class I Binding Affinities_

SERÇİNOĞLU O., ÖZBEK SARICA P.
5th International BAU-Drug Design Congress, 19 - 21 Ekim 2017

Detection of the allosteric residue network in effector caspase molecules by energy dissipation model

Bingol E. N., SERÇİNOĞLU O., ÖZBEK SARICA P.
5th International BAU-Drug Design Congress, 19 - 21 Ekim 2017

Investigation of Peptide Binding Affinity andThermalStability ofHuman Leukocyte Antigens (HLAs)

Bunsuz A., SERÇİNOĞLU O., ÖZBEK SARICA P.
19th UIPAB congress and 11th EBSA congress, 16 - 20 Temmuz 2017

Allelic dependence of MHC I stability on peptide termini conta ts in MD simulations

SERÇİNOĞLU O., ÖZBEK SARICA P.
19th UIPAB congress and 11th EBSA congress, 16 - 20 Temmuz 2017

Searching a communication pathway between allosteric siteand binding region in effector caspase molecules

Bingöl E. N., SERÇİNOĞLU O., ÖZBEK SARICA P.
BAU Drug Design, 13 - 15 Ekim 2016

Investigation of Peptide Binding Affinity and Complex Stability ofHuman Leukocyte Antigens HLAs

bunsuz a., SERÇİNOĞLU O., ÖZBEK SARICA P.
BAU Drug Design, 12 - 15 Ekim 2016

Exploration of allosteric paths in caspase molecules using energy dissipation

Bingol E. N., Sercinoglu O., Sarica P.
41st FEBS Congress on Molecular and Systems Biology for a Better Life, Kusadasi, Türkiye, 3 - 08 Eylül 2016, cilt.283, ss.235 identifier

Allelic modulation of global dynamics of HLA B 27 05 and HLA B 27 09 molecules

SERÇİNOĞLU O., ÖZBEK SARICA P.
13th Greta Pifat Mrzljak International School of Biophysics, 1 - 10 Eylül 2016

HLA B 44 Alellerinin Peptid Bağlanma Davranış Mekanizmalarının Hesaplamalı Olarak Araştırılması

Bunsuz A., SERÇİNOĞLU O., ÖZBEK SARICA P.
Biruni Üniversitesi Bilgisayar Destekli İlaç Tasarımı, Türkiye, 16 - 17 Mayıs 2016

Investigating Dynamics of HLA Molecules by Energy Dissipation

Bingol E. N., Sercinoglu O., ÖZBEK SARICA P.
60th Annual Meeting of the Biophysical-Society, Los-Angeles, Şili, 27 Şubat - 02 Mart 2016, cilt.110 identifier

Investigation of the binding behaviour of HLA B27 alleles at varying pH Conditions using computational methods

Sercinoglu O., ÖZBEK SARICA P.
3rd International BAU-Drug Design Congress, Istanbul, 1 - 03 Ekim 2015

Computational study on the binding behaviour of HLA B44 alleles

Sercinoglu O., ÖZBEK SARICA P.
3rd International BAU-Drug Design Congress, Istanbul, 1 - 03 Ekim 2015

Computational investigation of protein dynamics based on energy dissipation

Sercinoglu O., ÖZBEK SARICA P.
3rd International BAU-Drug Design Congress, Istanbul, 1 - 03 Ekim 2015

Structural characterization of peptide binding to class I MHC proteins using protein energy networks from molecular dynamics simulations

Sercinoglu O., ÖZBEK SARICA P.
3rd International BAU-Drug Design Congress, Istanbul, 1 - 03 Ekim 2015

Computational study on the binding behaviour of HLA B27 alleles at varying pH conditions

Ozcan G., Kutlu Kabas Z., Sercinoglu O., ÖZBEK SARICA P.
10th European Biophysics Congress, Dresden, 17 - 22 Temmuz 2015

Peptide dependent binding stabilization effect of 2 microglobulin on HLA B27 alleles

Sercinoglu O., ÖZBEK SARICA P.
10th European Biophysics Congress, Dresden, 17 - 22 Temmuz 2015

Peptide-dependent binding-stabilization effect of beta 2m on HLA B27 alleles: A computational study

Sercinoglu O., Ozbek P.
10th European-Biophysical-Societies-Association (EBSA) European Biophysics Congress, Dresden, Almanya, 18 - 22 Temmuz 2015, cilt.44 identifier

Computational study on the binding behaviour of HLA-B27 alleles at varying pH conditions

Ozcan G., Kabas Z. K., Sercinoglu O., Ozbek P.
10th European-Biophysical-Societies-Association (EBSA) European Biophysics Congress, Dresden, Almanya, 18 - 22 Temmuz 2015, cilt.44 identifier

Comparative study of functional dynamics in mutant von hippel lindau tumor suppressor protein structures

Güçlü T. F., ÖZBEK SARICA P., Ozer A. N.
Modeling of Biomolecular Systems Interactions, Dynamics, and Allostery: Bridging Experiments and Computations, Istanbul, Turkey, September 10-14, 2014, 10 - 14 Eylül 2014, ss.92

Computational investigation of the energy exchange pathways in peptide loaded major histocompatibility complex proteins

Sercinoglu O., Ozcan G., ÖZBEK SARICA P.
Modeling of Biomolecular Systems Interactions, Dynamics, and Allostery: Bridging Experiments and Computations, 10 - 14 Eylül 2014

An investigation of the effects of model simplification and water box shell size on the molecular dynamics simulations of peptide loaded major histocompatibility complex proteins

Sercinoglu O., ÖZBEK SARICA P.
Modeling of Biomolecular Systems Interactions, Dynamics, and Allostery: Bridging Experiments and Computations, 10 - 14 Eylül 2014

Comparison of the binding behavior of HLA B alleles related to ankylosing spondylitis disease by computational methods

Kutlu Kabas Z., Ozcan G., Sercinoglu O., ÖZBEK SARICA P.
Modeling of Biomolecular Systems Interactions, Dynamics, and Allostery: Bridging Experiments and Computations, 10 - 14 Eylül 2014

Binding behavior of HLA B alleles related to ankylosing spondylitis AS disease A comparative study by computational methods

Ozcan G., Kutlu Kabas Z., Sercinoglu O., ÖZBEK SARICA P.
ECCB’xx14, the 13th European Conference on Computational Biology, Strasbourg, 7 - 10 Eylül 2014

Computational study on the effect of pH on the binding behaviour of HLA B alleles

Kutlu Kabas Z., Ozcan G., Sercinoglu O., ÖZBEK SARICA P.
ECCB’xx14, the 13th European Conference on Computational Biology, 7 - 10 Eylül 2014

Dynamic Analysis of Mutant von Hippel Lindau Tumor Suppressor Protein structures

Güçlü T. F., ÖZBEK SARICA P., Ozer A. N.
2nd International BAU-Drug Design Congress, Istanbul, 17 - 19 Nisan 2014

Collective Dynamics provides a measure for biological association

Soner S., Ovalı Ş. K., ÖZBEK SARICA P., BenTal N., Haliloglu T.
CAPRI 2013 Combine and Conquer Meeting, 17 - 19 Nisan 2013

The intrinsic dynamics of partner chains aid in the detection of native complexes amongst docking decoys

Kaya C., Soner S., ÖZBEK SARICA P., Haliloglu T.
CAPRI 2013 Combine and Conquer Meeting, 17 - 19 Nisan 2013

Dynamics predefine protein binding

Soner S., ÖZBEK SARICA P., Haliloglu T.
Chemical Physics Congress-IX Izmir, İzmir, Türkiye, 14 - 16 Ekim 2010

Dynamics and evolutionary conservation of inter protein interfaces aid in the detection of native complexes amongst docking decoys

ÖZBEK SARICA P., Soner S., Chen N., Kalman M., Erman B., Bental N., et al.
CAPRI 4th Evaluation Meeting, 9 - 11 Aralık 2009

The origins of polyethylenes resistance to rapid plane stress rupture

ÖZBEK SARICA P., Leevers P.
5th ESIS TC4 Conference on Fracture of Polymers, Composites and Adhesives, 7 - 11 Eylül 2008

Plane stress rapid fracture resistance of pipe grade PE Estimation from tensile drawing data

ÖZBEK SARICA P., Leevers P.
ANTEC Conference Proceedings, 6 - 10 Mayıs 2007

Kitap & Kitap Bölümleri

MOLEKÜLER DİNAMİK (MD) SİMÜLASYONLARI

Bingol E. N., SERÇİNOĞLU O., ÖZBEK SARICA P.
PROTEİN: YAPISI, MÜHENDİSLİĞİ, ETKİLEŞİMLERİ, DİNAMİĞİ VE İLAÇ TASARIMINDAKİ YERİ, Saliha Ece Acuner, Editör, Ankara Nobel Tıp Kitabevleri, İstanbul, ss.237-255, 2021

In Silico Databases and Tools for Drug Repurposing

Serçinoğlu O., Özbek Sarıca P.
In Silico Drug Design, Kunal Roy, Editör, Elsevier Science, Oxford/Amsterdam , London, ss.703-743, 2019

Metrikler

Yayın

96

Atıf (WoS)

326

H-İndeks (WoS)

8

Atıf (Scopus)

355

H-İndeks (Scopus)

9

Atıf (Scholar)

147

H-İndeks(Scholar)

5

Proje

15

Tez Danışmanlığı

10

Açık Erişim

3
BM Sürdürülebilir Kalkınma Amaçları