Publications & Works

Publication Network
Journal articles indexed in SCI, SSCI, and AHCI

Multi-approach study on diethylhexyl phthalate and monoethylhexyl phthalate binding to lysozyme: In silico, bioactivity and surface plasmon resonance analyses

Aydoğan Ahbab M., Taşteki̇l I., Pınar E. G., ÖZBEK SARICA P., Türkoğlu E. A.
Toxicology Letters , vol.408, pp.54-64, 2025 (SCI-Expanded) identifier identifier

Binding Affinity and Interaction Mechanism of Chlorhexidine with Lysozyme: Insights from Surface Plasmon Resonance, Molecular Docking, and Molecular Dynamics Simulations

Çungur S., Taştekil I., ÖZBEK SARICA P., Türkoğlu E. A.
ChemistrySelect , vol.10, no.7, 2025 (SCI-Expanded) identifier

Elucidation of the Binding Interaction between β-sitosterol and Lysozyme using Molecular Docking, Molecular Dynamics and Surface Plasmon Resonance Analysis

Sayğı T. K., Pınar E. G., Taştekil I., ÖZBEK SARICA P., TOPÇU G., Türkoğlu E. A.
Chemistry and Biodiversity , vol.22, no.2, 2025 (SCI-Expanded) identifier identifier

Antivirulence therapy: type IV pilus as a druggable target for bacterial infections

Basaran E., Avci F. G., Ozcan A., Kula C., Ben Ali Hassine S., Keskin O., et al.
Medicinal Chemistry Research , vol.34, no.2, pp.285-300, 2025 (SCI-Expanded) identifier

Surface plasmon resonance, molecular docking, and molecular dynamics simulation studies of lysozyme interaction with tannic acid

Türkoğlu E. A., Taştekil I., ÖZBEK SARICA P.
Food Science and Nutrition , vol.12, no.10, pp.7392-7404, 2024 (SCI-Expanded) identifier

Lung Adenocarcinoma Systems Biomarker and Drug Candidates Identified by Machine Learning, Gene Expression Data, and Integrative Bioinformatics Pipeline

Soyer S. M., ÖZBEK SARICA P., KASAVİ C.
OMICS A Journal of Integrative Biology , vol.28, no.8, pp.408-420, 2024 (SCI-Expanded) identifier identifier

Polymorphism in F pocket affects peptide selection and stability of type 1 diabetes-associated HLA-B39 allotypes.

Amarajeewa A. W. P., Özcan A., Mukhtiar A., Ren X., Wang Q., Ozbek P., et al.
European journal of immunology , vol.54, no.6, 2024 (SCI-Expanded) Sustainable Development identifier identifier

Attenuation of Type IV pili activity by natural products

Yalkut K., Ben Ali Hassine S., Basaran E., KULA C., Ozcan A., Avci F. G., et al.
Journal of Biomolecular Structure and Dynamics , 2024 (SCI-Expanded) identifier identifier

Piperidine-based natural products targeting Type IV pili antivirulence: A computational approach

Ozcan A., Keskin O., Sariyar Akbulut B., Özbek Sarica P.
JOURNAL OF MOLECULAR GRAPHICS & MODELLING , vol.119, 2023 (SCI-Expanded) Sustainable Development identifier identifier identifier

A review on the mechanistic details of OXA enzymes of ESKAPE pathogens

Avci F. G., Tastekil I., Jaisi A., ÖZBEK SARICA P., SARIYAR AKBULUT B.
PATHOGENS AND GLOBAL HEALTH , vol.117, no.3, pp.219-234, 2023 (SCI-Expanded) identifier identifier identifier

Epistatic effects between amino acid insertions and substitutions mediate toxin-resistance of vertebrate Na+, K+-ATPases

Mohammadi S., Özdemir H. I., Özbek Sarica P., Sumbul F., Stiller J., Deng Y., et al.
MOLECULAR BIOLOGY AND EVOLUTION , vol.1, no.1, pp.100-102, 2022 (SCI-Expanded) identifier identifier identifier

How Epstein-Barr virus envelope glycoprotein gp350 tricks the CR2? A molecular dynamics study

Bingöl E. N., Taştekil I., Yay C., Keskin N., ÖZBEK SARICA P.
Journal of Molecular Graphics and Modelling , vol.114, 2022 (SCI-Expanded) Sustainable Development identifier identifier identifier

Assessment of 13 in silico pathogenicity methods on cancer-related variants

Yazar M., ÖZBEK SARICA P.
Computers in Biology and Medicine , vol.145, 2022 (SCI-Expanded) Sustainable Development identifier identifier identifier

Exploring the recognition differences of peptides in TCR-pMHC complex

Bingol E. N., Özbek Sarica P.
BIOPHYSICAL JOURNAL , vol.121, no.3, 2022 (SCI-Expanded) identifier

Hydration modulates oxygen channel residues for oxygenation of cysteine dioxygenase: Perspectives from molecular dynamics simulations

Tariq M., Özbek Sarica P., Moin S. T.
JOURNAL OF MOLECULAR GRAPHICS & MODELLING , vol.110, 2022 (SCI-Expanded) identifier identifier identifier

Systems biomarkers for papillary thyroid cancer prognosis and treatment through multi-omics networks

Gulfidan G., Soylu M., Demirel D., Erdonmez H. B. C., Beklen H., ÖZBEK SARICA P., et al.
ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS , vol.715, 2022 (SCI-Expanded) Sustainable Development identifier identifier identifier

Unraveling the Allosteric Communication Mechanisms in T-Cell Receptor-Peptide-Loaded Major Histocompatibility Complex Dynamics Using Molecular Dynamics Simulations: An Approach Based on Dynamic Cross Correlation Maps and Residue Interaction Energy Calculations

Bingol E. N., Sercinoglu O., Özbek Sarica P.
JOURNAL OF CHEMICAL INFORMATION AND MODELING , vol.61, no.5, pp.2444-2453, 2021 (SCI-Expanded) Sustainable Development identifier identifier identifier

In SilicoTools and Approaches for the Prediction of Functional and Structural Effects of Single-Nucleotide Polymorphisms on Proteins: An Expert Review

Yazar M., ÖZBEK SARICA P.
OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY , vol.25, pp.23-37, 2021 (SCI-Expanded) Sustainable Development identifier identifier identifier

Identification of novel inhibitors of the ABC transporter BmrA

Serçinoğlu O., Senturk D., Altinisik K., Avci F., Frlan R., Tomašič T., et al.
BIOORGANIC CHEMISTRY , vol.105, 2020 (SCI-Expanded) identifier identifier identifier

Revisiting allostery in CREB-binding protein (CBP) using residue-based interaction energy

Yazar M., Ozbek P.
JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN , vol.34, no.9, pp.965-974, 2020 (SCI-Expanded) identifier identifier identifier

New Machine Learning Applications to Accelerate Personalized Medicine in Breast Cancer: Rise of the Support Vector Machines

Ozer M. E., Sarica P., ARĞA K. Y.
OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY , vol.24, no.5, pp.241-246, 2020 (SCI-Expanded) Sustainable Development identifier identifier identifier

Sequence-structure-function relationships in class I MHC: A local frustration perspective

Serçinoğlu O., Ozbek P.
PLOS ONE , vol.15, no.5, 2020 (SCI-Expanded) identifier identifier identifier

Computational investigation of peptide binding stabilities of HLA-B*27 and HLA-B*44 alleles

Bunsuz A., SERÇİNOĞLU O., Ozbek P.
Computational Biology and Chemistry , vol.84, 2020 (SCI-Expanded) identifier identifier identifier

Next-Generation Sequencing Identifies BRCA1 and/or BRCA2 Mutations in Women at High Hereditary Risk for Breast Cancer with Shorter Telomere Length

Peker E., Yenmiş G., Bingöl E., Yüksel Ş., Tokat F., Özbek P., et al.
OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY , vol.24, no.1, pp.5-15, 2020 (SCI-Expanded) Sustainable Development identifier identifier identifier

ProSNEx: a web-based application for exploration and analysis of protein structures using network formalism

Aydınkal R. M., Serçinoğlu O., Özbek Sarıca P.
Nucleic Acids Research , vol.1, no.1, 2019 (SCI-Expanded) identifier identifier identifier

How Do Mutations and Allosteric Inhibitors Modulate Caspase-7 Activity? A Molecular Dynamics Study

Bingol E. N., Serçinoğlu O., Özbek Sarıca P.
Journal Of Biomolecular Structure & Dynamics , vol.37, no.13, pp.3456-3466, 2019 (SCI-Expanded) Sustainable Development identifier identifier identifier

gRINN: a tool for calculation of residue interaction energies and protein energy network analysis of molecular dynamics simulations

Sercinoglu O., Özbek Sarıca P.
NUCLEIC ACIDS RESEARCH , vol.46, 2018 (SCI-Expanded) identifier

Computational characterization of residue couplings and micropolymorphism-induced changes in the dynamics of two differentially disease-associated human MHC class-I alleles

Sercinoglu O., Özbek Sarıca P.
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS , vol.36, pp.724-740, 2018 (SCI-Expanded) Sustainable Development identifier identifier identifier

A computational docking study on the pH dependence of peptide binding to HLA-B27 sub-types differentially associated with ankylosing spondylitis

Sercinoglu O., Ozcan G., Kabas Z. K., ÖZBEK SARICA P.
JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN , vol.30, no.7, pp.569-581, 2016 (SCI-Expanded) identifier identifier identifier

Dynamic characterization of HLA-B*44 Alleles: A comparative molecular dynamics simulation study

ÖZBEK SARICA P.
COMPUTATIONAL BIOLOGY AND CHEMISTRY , vol.62, pp.12-16, 2016 (SCI-Expanded) Sustainable Development identifier identifier identifier

DynaFace: Discrimination between Obligatory and Non-obligatory Protein-Protein Interactions Based on the Complex's Dynamics

Soner S., ÖZBEK SARICA P., Garzon J. I., Ben-Tal N., HALİLOĞLU T.
PLOS COMPUTATIONAL BIOLOGY , vol.11, no.10, 2015 (SCI-Expanded) identifier

Hot Spots in a Network of Functional Sites

ÖZBEK SARICA P., Soner S., HALİLOĞLU T.
PLOS ONE , vol.8, no.9, 2013 (SCI-Expanded) identifier identifier identifier

Community wide assessment of protein interface modeling suggests improvements to design methodology

Sarel J F., Timothy A W., Strauch E., Corn J. E., Qin S., Zhou H., et al.
Journal Of Molecular Biology , vol.414, pp.289-302, 2011 (SCI-Expanded) identifier identifier identifier

DNABINDPROT fluctuation based predictor of DNA binding residues within a network of interacting residues

Özbek Sarıca P., Soner S., Erman B., Haliloglu T.
Nucleic Acids Research , vol.38, pp.417-423, 2010 (SCI-Expanded) identifier identifier identifier

Fracture mechanics analysis of arc shaped specimens for pipe grade polymers

ÖZBEK SARICA P., Argyrakis C., Leevers P.
Polymer Testing , vol.28, pp.357-361, 2009 (SCI-Expanded) identifier identifier

Uniaxial tensile properties underlying plane stress rapid fracture resistance in polyethylene

ÖZBEK SARICA P., Leevers P.
Polymer Engineering And Science , vol.48, pp.1855-1861, 2008 (SCI-Expanded) identifier identifier
Articles Published in Other Journals

Differential Interactome Based Drug Repositioning Unraveled Abacavir, Exemestane, Nortriptyline Hydrochloride, and Tolcapone as Potential Therapeutics for Colorectal Cancers

beklen h., arslan s., Gulfidan G., Turanlı B., ÖZBEK SARICA P., Karademir Yılmaz B., et al.
Frontiers in Bioinformatics , vol.1, 2021 (Peer-Reviewed Journal) Sustainable Development identifier

HLA Moleküllerinde Peptit Ligandlarının Kompleks Stabilitesine Olan Etkisinin Araştırılması

Bunsuz A., Serçinoğlu O., Özbek Sarıca P.
International journal of advances in engineering and pure sciences (Online) , vol.30, 2018 (Peer-Reviewed Journal)

Dynamic Characterization of HLA Molecules by GNM

SERÇİNOĞLU O., ÖZBEK SARICA P.
Dokuz Eylül Üniversitesi Mühendislik Fakültesi Fen ve Mühendislik Dergisi , vol.20, no.59, pp.376-399, 2018 (Peer-Reviewed Journal) identifier

Protein dynamics

ÖZBEK SARICA P., Haliloglu T.
Sigma Mühendislik ve Fen Bilimleri Dergisi , vol.27, pp.161-170, 2009 (Peer-Reviewed Journal)

Plane stress rapid fracture resistance of pipe grade PE Estimation from tensile drawing data

ÖZBEK SARICA P., Leevers P. S.
ANTEC Conference Proceedings , vol.5, pp.2880-2884, 2007 (Peer-Reviewed Journal)
Papers Presented at Peer-Reviewed Scientific Conferences

Implications of Machine Learning Approaches in Cancer for Biomarker Discovery: Oversampling and Feature Selection

Soyer S. M., Özbek Sarica P., Kasavi C.
5th International Eurasian Conference on Science, Engineering and Technology (EurasianSciEnTech 2024), Ankara, Turkey, 26 - 28 June 2024, (Summary Text) Sustainable Development

A drug repurposing study on the inhibition of type IV pili

Özcan A., Ben Ali Hassine S., KULA C., AVCI F. G., ÖZBEK SARICA P., SARIYAR AKBULUT B.
47th FEBS Congress, Tours, France, 08 July 2023, (Summary Text)

Screening of FDA-Approved Natural Drugs as Anti-Virulence Agents Against Pseudomonas aeruginosa and Neisseria meningitidis

Özcan Yöner A., KULA C., AVCI F. G., KESKİN ÖZKAYA Z. Ö., ÖZBEK SARICA P., SARIYAR AKBULUT B.
FEMS Conference on Microbiology, Belgrade, Serbia, 30 June 2022, (Summary Text)

Differential Interactome Based Drug Repositioning Unraveled Potential Therapeutics for Colorectal Cancers

BEKLEN H., Arslan S., GULFİDAN G., TURANLI B., ÖZBEK SARICA P., YILMAZ B., et al.
3rd EURASIA BIOCHEMICAL APPROACHES & TECHNOLOGIES (EBAT) CONGRESS, Antalya, Turkey, 4 - 07 November 2021, (Summary Text)

New inhibitors of the BmrA pump identified through virtual screening

Senturk D., SERÇİNOĞLU O., ALTINIŞIK KAYA F. E., Frlan R., Tomasic T., AVCI F. G., et al.
MuTaLig COST ACTION CA15135 4th WG meeting, 05 March 2020, (Summary Text)

Exploring dynamics of pMHCusing accelerated molecular dynamics

Bingol E. N., ÖZBEK SARICA P.
7th International Bahçeşehir University (BAU) Drug Design Congress, 19 - 21 December 2019, (Summary Text)

A Tool for Investigating Protein Signaling Network by Perturbation of External Energy Dissipation

özer m. e., özdemir h. i., SERÇİNOĞLU O., Bingol E. N., ÖZBEK SARICA P.
7th International Bahçeşehir University (BAU) Drug Design Congress, 19 - 21 December 2019, (Summary Text)

Identification of allostery in CREB-Binding Protein via using pairwiseresidue interaction energy method

YAZAR M., ÖZBEK SARICA P.
7th International Bahçeşehir University (BAU) Drug Design Congress, 19 - 21 December 2019, (Summary Text)

Ailesel Meme Kanseri Hastalarında BRCA1 ve BRCA2 Genlerinin Yeni Nesil Dizileme Yöntemi ile Dizilenmesi ve Telomer Uzunluğuyla İlişkisi

PEKER EYÜBOĞLU İ., YENMİŞ G., BİNGÖL E. N., YÜKSEL KILIÇTURGAY Ş., TOKAT F., ÖZBEK SARICA P., et al.
Tıbbi Biyoloji ve Genetik kongresi, Turkey, 27 - 30 October 2019, (Summary Text) Sustainable Development

Determination Of Candidate Biomarkers Through Differential Interactome in Colorectal Adenocarcinoma

BEKLEN H., GULFİDAN G., TURANLI B., ÖZBEK SARICA P., YILMAZ B., ARĞA K. Y.
The 12th International Symposium on Health Informatics and Bioinformatics (HIBIT 2019), İzmir, Turkey, 17 - 19 October 2019, (Summary Text)

Comparative dynamical characterization of TCR and MHC molecules upon binding via molecular dynamics simulations

Bingol E. N., SERÇİNOĞLU O., ÖZBEK SARICA P.
ECOMB, 19 - 21 September 2019, (Summary Text)

Biophysical Links Between Polymorphism, Stability and Peptide-Binding in the Major Histocompatibility Complex

SERÇİNOĞLU O., ÖZBEK SARICA P.
6th International BAU-Drug Design Congress, 13 - 15 December 2018, (Summary Text)

Comparative Analysis of Two Binding Sites on The BmrA Efflux Pump

şentürk karagöz d., SERÇİNOĞLU O., ÖZBEK SARICA P., orelle c., Jault J., SARIYAR AKBULUT B.
6th International BAU-Drug Design Congress, Turkey, 13 - 15 December 2018, (Summary Text)

Protein Networks: Development of a web tool to analyze protein structural topology

aydınkal r. m., SERÇİNOĞLU O., ÖZBEK SARICA P.
6th International BAU-Drug Design Congress, 13 - 15 December 2018, (Summary Text)

Dynamical characterization of TCRpMHC complex: A comparative molecular dynamics study

Bingol E. N., SERÇİNOĞLU O., ÖZBEK SARICA P.
6th International BAU-Drug Design Congress, 13 - 15 December 2018, (Summary Text)

Comparison of allosteric pathway identification of CREB-binding protein using computational methods

YAZAR M., ÖZBEK SARICA P.
6th International BAU-Drug Design Congress, 13 - 15 December 2018, (Summary Text)

VIRTUAL SCREENING FOR INHIBITORS OF THE BmrA PUMP

şentürk karagöz d., SERÇİNOĞLU O., SARIYAR AKBULUT B., ÖZBEK SARICA P., orelle c., jault j. m.
HIBIT 2018 11TH INTERNATIONAL SYMPOSIUM ON HEALTH INFORMATICS AND BIOINFORMATICS, 25 - 27 October 2018, (Summary Text)

Biophysical basis of MHC Class I polymorphism

SERÇİNOĞLU O., ÖZBEK SARICA P.
International conference on applied mathematics, modeling and Life Sciences, 3 - 05 October 2018, (Summary Text)

Development of a web-based tool for network analysis of protein structures

Aydınkal R. M., SERÇİNOĞLU O., ÖZBEK SARICA P.
International conference on applied mathematics, modeling and Life Sciences, 3 - 05 October 2018, (Summary Text)

Computational Approaches to the Investigation ofPeptide-MHC Complex Stability

Bunsuz A., SERÇİNOĞLU O., ÖZBEK SARICA P.
International conference on applied mathematics, modeling and Life Sciences, 3 - 05 October 2018, (Summary Text)

Comparison of computational allosteric pathwayidentification methods

YAZAR M., SERÇİNOĞLU O., ÖZBEK SARICA P.
International conference on applied mathematics, modeling and Life Sciences, 3 - 05 October 2018, (Summary Text)

Investigation of catalytic loop motions and global dynamics ofcaspase- 7 structures

Bingöl E. N., SERÇİNOĞLU O., ÖZBEK SARICA P.
International conference on applied mathematics, modeling and Life Sciences, 3 - 05 October 2018, (Summary Text)

Understanding the dynamic natureof proteins using molecular dynamics (MD)simulations

ÖZBEK SARICA P.
International conference on applied mathematics, modeling and Life Sciences, 3 - 05 October 2018, (Summary Text)

Quantifying Peptide Binding Affinities from Non-equilibrium Work

Sercinoglu O., ÖZBEK SARICA P.
62nd Annual Meeting of the Biophysical-Society, San-Francisco, Costa Rica, 17 - 21 February 2018, vol.114, (Summary Text) identifier

Effect of temperature on the molecular dynamics simulations of HLA-A 02 alleles,

Bunsuz A., SERÇİNOĞLU O., ÖZBEK SARICA P.
International Symposium on Chemistry via Computation Applications on Molecular Nanoscience, 30 October 2017, (Summary Text)

Construction of allosteric residue networks in caspase-7 using energy perturbation responses

Bingol E. N., SERÇİNOĞLU O., ÖZBEK SARICA P.
International Symposium on Chemistry via Computation Applications on Molecular Nanoscience, 30 October 2017, (Summary Text)

A Software Tool for Parallel Computation and Characterization of Residue Interaction Energies from Molecular Dynamics Simulations

SERÇİNOĞLU O., ÖZBEK SARICA P.
International Symposium on Chemistry via Computation Applications on Molecular Nanoscience, 30 October 2017, (Summary Text)

Immunogenic Peptide - HLA-A 02:01 Complexes Studied by Comparative Molecular Dynamics Simulation

Bunsuz A., SERÇİNOĞLU O., ÖZBEK SARICA P.
5th International BAU-Drug Design Congress, 19 - 21 October 2017, (Summary Text)

Steered Molecular Dynamics Simulation for Efficient Ranking of Peptide - MHC Class I Binding Affinities_

SERÇİNOĞLU O., ÖZBEK SARICA P.
5th International BAU-Drug Design Congress, 19 - 21 October 2017, (Summary Text)

Detection of the allosteric residue network in effector caspase molecules by energy dissipation model

Bingol E. N., SERÇİNOĞLU O., ÖZBEK SARICA P.
5th International BAU-Drug Design Congress, 19 - 21 October 2017, (Summary Text)

Investigation of Peptide Binding Affinity andThermalStability ofHuman Leukocyte Antigens (HLAs)

Bunsuz A., SERÇİNOĞLU O., ÖZBEK SARICA P.
19th UIPAB congress and 11th EBSA congress, 16 - 20 July 2017, (Summary Text)

Allelic dependence of MHC I stability on peptide termini conta ts in MD simulations

SERÇİNOĞLU O., ÖZBEK SARICA P.
19th UIPAB congress and 11th EBSA congress, 16 - 20 July 2017, (Summary Text)

Searching a communication pathway between allosteric siteand binding region in effector caspase molecules

Bingöl E. N., SERÇİNOĞLU O., ÖZBEK SARICA P.
BAU Drug Design, 13 - 15 October 2016, (Summary Text)

Investigation of Peptide Binding Affinity and Complex Stability ofHuman Leukocyte Antigens HLAs

bunsuz a., SERÇİNOĞLU O., ÖZBEK SARICA P.
BAU Drug Design, 12 - 15 October 2016, (Summary Text)

Exploration of allosteric paths in caspase molecules using energy dissipation

Bingol E. N., Sercinoglu O., Sarica P.
41st FEBS Congress on Molecular and Systems Biology for a Better Life, Kusadasi, Turkey, 3 - 08 September 2016, vol.283, pp.235, (Summary Text) identifier

Allelic modulation of global dynamics of HLA B 27 05 and HLA B 27 09 molecules

SERÇİNOĞLU O., ÖZBEK SARICA P.
13th Greta Pifat Mrzljak International School of Biophysics, 1 - 10 September 2016, (Summary Text)

HLA B 44 Alellerinin Peptid Bağlanma Davranış Mekanizmalarının Hesaplamalı Olarak Araştırılması

Bunsuz A., SERÇİNOĞLU O., ÖZBEK SARICA P.
Biruni Üniversitesi Bilgisayar Destekli İlaç Tasarımı, Turkey, 16 - 17 May 2016, (Summary Text)

Investigating Dynamics of HLA Molecules by Energy Dissipation

Bingol E. N., Sercinoglu O., ÖZBEK SARICA P.
60th Annual Meeting of the Biophysical-Society, Los-Angeles, Chile, 27 February - 02 March 2016, vol.110, (Summary Text) identifier

Investigation of the binding behaviour of HLA B27 alleles at varying pH Conditions using computational methods

Sercinoglu O., ÖZBEK SARICA P.
3rd International BAU-Drug Design Congress, Istanbul, 1 - 03 October 2015, (Summary Text)

Computational study on the binding behaviour of HLA B44 alleles

Sercinoglu O., ÖZBEK SARICA P.
3rd International BAU-Drug Design Congress, Istanbul, 1 - 03 October 2015, (Summary Text)

Computational investigation of protein dynamics based on energy dissipation

Sercinoglu O., ÖZBEK SARICA P.
3rd International BAU-Drug Design Congress, Istanbul, 1 - 03 October 2015, (Summary Text)

Structural characterization of peptide binding to class I MHC proteins using protein energy networks from molecular dynamics simulations

Sercinoglu O., ÖZBEK SARICA P.
3rd International BAU-Drug Design Congress, Istanbul, 1 - 03 October 2015, (Summary Text)

Computational study on the binding behaviour of HLA B27 alleles at varying pH conditions

Ozcan G., Kutlu Kabas Z., Sercinoglu O., ÖZBEK SARICA P.
10th European Biophysics Congress, Dresden, 17 - 22 July 2015, (Summary Text)

Peptide dependent binding stabilization effect of 2 microglobulin on HLA B27 alleles

Sercinoglu O., ÖZBEK SARICA P.
10th European Biophysics Congress, Dresden, 17 - 22 July 2015, (Summary Text)

Peptide-dependent binding-stabilization effect of beta 2m on HLA B27 alleles: A computational study

Sercinoglu O., Ozbek P.
10th European-Biophysical-Societies-Association (EBSA) European Biophysics Congress, Dresden, Germany, 18 - 22 July 2015, vol.44, (Summary Text) identifier

Computational study on the binding behaviour of HLA-B27 alleles at varying pH conditions

Ozcan G., Kabas Z. K., Sercinoglu O., Ozbek P.
10th European-Biophysical-Societies-Association (EBSA) European Biophysics Congress, Dresden, Germany, 18 - 22 July 2015, vol.44, (Summary Text) identifier

Comparative study of functional dynamics in mutant von hippel lindau tumor suppressor protein structures

Güçlü T. F., ÖZBEK SARICA P., Ozer A. N.
Modeling of Biomolecular Systems Interactions, Dynamics, and Allostery: Bridging Experiments and Computations, Istanbul, Turkey, September 10-14, 2014, 10 - 14 September 2014, pp.92, (Summary Text)

Computational investigation of the energy exchange pathways in peptide loaded major histocompatibility complex proteins

Sercinoglu O., Ozcan G., ÖZBEK SARICA P.
Modeling of Biomolecular Systems Interactions, Dynamics, and Allostery: Bridging Experiments and Computations, 10 - 14 September 2014, (Summary Text)

An investigation of the effects of model simplification and water box shell size on the molecular dynamics simulations of peptide loaded major histocompatibility complex proteins

Sercinoglu O., ÖZBEK SARICA P.
Modeling of Biomolecular Systems Interactions, Dynamics, and Allostery: Bridging Experiments and Computations, 10 - 14 September 2014, (Summary Text)

Comparison of the binding behavior of HLA B alleles related to ankylosing spondylitis disease by computational methods

Kutlu Kabas Z., Ozcan G., Sercinoglu O., ÖZBEK SARICA P.
Modeling of Biomolecular Systems Interactions, Dynamics, and Allostery: Bridging Experiments and Computations, 10 - 14 September 2014, (Summary Text)

Binding behavior of HLA B alleles related to ankylosing spondylitis AS disease A comparative study by computational methods

Ozcan G., Kutlu Kabas Z., Sercinoglu O., ÖZBEK SARICA P.
ECCB’xx14, the 13th European Conference on Computational Biology, Strasbourg, 7 - 10 September 2014, (Summary Text)

Computational study on the effect of pH on the binding behaviour of HLA B alleles

Kutlu Kabas Z., Ozcan G., Sercinoglu O., ÖZBEK SARICA P.
ECCB’xx14, the 13th European Conference on Computational Biology, 7 - 10 September 2014, (Summary Text)

Dynamic Analysis of Mutant von Hippel Lindau Tumor Suppressor Protein structures

Güçlü T. F., ÖZBEK SARICA P., Ozer A. N.
2nd International BAU-Drug Design Congress, Istanbul, 17 - 19 April 2014, (Summary Text)

Collective Dynamics provides a measure for biological association

Soner S., Ovalı Ş. K., ÖZBEK SARICA P., BenTal N., Haliloglu T.
CAPRI 2013 Combine and Conquer Meeting, 17 - 19 April 2013, (Summary Text)

The intrinsic dynamics of partner chains aid in the detection of native complexes amongst docking decoys

Kaya C., Soner S., ÖZBEK SARICA P., Haliloglu T.
CAPRI 2013 Combine and Conquer Meeting, 17 - 19 April 2013, (Summary Text)

Dynamics predefine protein binding

Soner S., ÖZBEK SARICA P., Haliloglu T.
Chemical Physics Congress-IX Izmir, İzmir, Turkey, 14 - 16 October 2010, (Summary Text)

Dynamics and evolutionary conservation of inter protein interfaces aid in the detection of native complexes amongst docking decoys

ÖZBEK SARICA P., Soner S., Chen N., Kalman M., Erman B., Bental N., et al.
CAPRI 4th Evaluation Meeting, 9 - 11 December 2009, (Summary Text)

The origins of polyethylenes resistance to rapid plane stress rupture

ÖZBEK SARICA P., Leevers P.
5th ESIS TC4 Conference on Fracture of Polymers, Composites and Adhesives, 7 - 11 September 2008, (Summary Text)

Plane stress rapid fracture resistance of pipe grade PE Estimation from tensile drawing data

ÖZBEK SARICA P., Leevers P.
ANTEC Conference Proceedings, 6 - 10 May 2007, (Full Text)
Books

MOLEKÜLER DİNAMİK (MD) SİMÜLASYONLARI

Bingol E. N., SERÇİNOĞLU O., ÖZBEK SARICA P.
in: PROTEİN: YAPISI, MÜHENDİSLİĞİ, ETKİLEŞİMLERİ, DİNAMİĞİ VE İLAÇ TASARIMINDAKİ YERİ, Saliha Ece Acuner, Editor, Ankara Nobel Tıp Kitabevleri, İstanbul, pp.237-255, 2021

In Silico Databases and Tools for Drug Repurposing

Serçinoğlu O., Özbek Sarıca P.
in: In Silico Drug Design, Kunal Roy, Editor, Elsevier Science, Oxford/Amsterdam , London, pp.703-743, 2019
Metrics

Publication

105

Citation (WoS)

326

H-Index (WoS)

8

Citation (Scopus)

357

H-Index (Scopus)

9

Citation (Scholar)

150

H-Index (Scholar)

5

Citiation (Sum Other)

11

Project

16

Thesis Advisory

10

Open Access

3
UN Sustainable Development Goals