Publications & Works

Publication Network
Journal articles indexed in SCI, SSCI, and AHCI

Identifying new molecular signatures and potential therapeutics for idiopathic pulmonary fibrosis: a network medicine approach

Akca M. N., KASAVİ C.
Mammalian Genome , vol.35, no.4, pp.734-748, 2024 (SCI-Expanded) identifier identifier

Exploring COVID-19 Pandemic Disparities with Transcriptomic Meta-analysis from the Perspective of Personalized Medicine

Kori M., KASAVİ C., ARGA K. Y.
Journal of Microbiology , vol.62, no.9, pp.785-798, 2024 (SCI-Expanded) identifier identifier

Lung Adenocarcinoma Systems Biomarker and Drug Candidates Identified by Machine Learning, Gene Expression Data, and Integrative Bioinformatics Pipeline

Soyer S. M., ÖZBEK SARICA P., KASAVİ C.
OMICS A Journal of Integrative Biology , vol.28, no.8, pp.408-420, 2024 (SCI-Expanded) identifier identifier

Enhanced preservation of viability and species stratification in Lacticaseibacillus group using levan-fortified skim milk as a cryoprotectant during freeze-drying

Yavuz M., ERGİNER HASKÖYLÜ M., KASAVİ C., TOKSOY ÖNER E.
Food Science and Biotechnology , 2024 (SCI-Expanded) identifier

Idiopathic Pulmonary Arterial Hypertension: Network-Based Integration of Multi-Omics Data Reveals New Molecular Signatures and Candidate Drugs

KASAVİ C.
OMICS A Journal of Integrative Biology , vol.27, no.7, pp.315-326, 2023 (SCI-Expanded) identifier identifier

Gene co-expression network analysis revealed novel biomarkers for ovarian cancer

KASAVİ C.
FRONTIERS IN GENETICS , vol.13, 2022 (SCI-Expanded) Sustainable Development identifier identifier identifier

Genomic Analysis Provides New Insights Into Biotechnological and Industrial Potential of Parageobacillus thermantarcticus M1

YILDIZ S. Y., Finore I., Leone L., Romano I., Lama L., KASAVİ C., et al.
FRONTIERS IN MICROBIOLOGY , vol.13, 2022 (SCI-Expanded) identifier identifier identifier

Multiomics Data Integration Identifies New Molecular Signatures for Abdominal Aortic Aneurysm and Aortic Occlusive Disease: Implications for Early Diagnosis, Prognosis, and Therapeutic Targets

Kori M., Cig D., Arga K. Y., Kasavi C.
OMICS A JOURNAL OF INTEGRATIVE BIOLOGY , vol.26, no.5, pp.1-15, 2022 (SCI-Expanded) identifier identifier identifier

Developments in effective use of volatile organic compound analysis to assess flavour formation during cheese ripening

Yavuz M., KASAVİ C., Oner E. T.
JOURNAL OF DAIRY RESEARCH , vol.88, pp.461-467, 2021 (SCI-Expanded) identifier identifier identifier

Process development for the continuous production of heterologous proteins by the industrial yeast, Komagataella phaffii

Cankorur-Cetinkaya A., Narraidoo N., Kasavi C., Slater N. K. H., Archer D. B., Oliver S. G.
BIOTECHNOLOGY AND BIOENGINEERING , vol.115, no.12, pp.2962-2973, 2018 (SCI-Expanded) identifier identifier identifier

Halomonas smyrnensis as a cell factory for co-production of PHB and levan

Tohme S., Hacıosmanoğlu G. G., Eroğlu M. S., Kasavi C., Genç S., Can Z. S., et al.
INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES , vol.118, pp.1238-1246, 2018 (SCI-Expanded) Sustainable Development identifier identifier identifier

An integrative analysis of transcriptomic response of ethanol tolerant strains to ethanol in Saccharomyces cerevisiae

Kasavi C., Eraslan S., Oner E., Kirdar B.
MOLECULAR BIOSYSTEMS , vol.12, no.2, pp.464-476, 2016 (SCI-Expanded) identifier identifier identifier

The global transcriptional response of a raw starch-degrading amylolytic Saccharomyces cerevisiae strain to oxygen limitation and genetic modification

Kasavi C., Eraslan S., TOKSOY ÖNER E., KIRDAR B.
TURKISH JOURNAL OF BIOLOGY , vol.40, no.3, pp.684-723, 2016 (SCI-Expanded) identifier identifier

A system based network approach to ethanol tolerance in Saccharomyces cerevisiae

Kasavi C., Eraslan S., ARĞA K. Y., Oner E. T., KIRDAR B.
BMC SYSTEMS BIOLOGY , vol.8, 2014 (SCI-Expanded) identifier identifier identifier

Evaluation of industrial Saccharomyces cerevisiae strains for ethanol production from biomass

Kasavi C., Finore I., Lama L., Nicolaus B., Oliver S. G., Oner E. T., et al.
BIOMASS & BIOENERGY , vol.45, pp.230-238, 2012 (SCI-Expanded) identifier identifier

Identification of candidate genes related to ethanol tolerance in Saccharomyces cerevisiae via a systems based modular approach

Kasavi C., ARĞA K. Y., Oner E. T., KIRDAR B.
NEW BIOTECHNOLOGY , vol.29, 2012 (SCI-Expanded) identifier

Investigating the transcriptional differences of amylolytic Saccharomyces cerevisiae strains developed for bioethanol production via a systems based approach

Kasavi C., Oner E. T., Oliver S. G., KIRDAR B.
NEW BIOTECHNOLOGY , vol.29, 2012 (SCI-Expanded) identifier

Purification, biochemical characterization and gene sequencing of a thermostable raw starch digesting alpha-amylase from Geobacillus thermoleovorans subsp stromboliensis subsp nov.

Finore I., Kasavi C., Poli A., Romano I., Oner E. T., KIRDAR B., et al.
WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY , vol.27, no.10, pp.2425-2433, 2011 (SCI-Expanded) identifier identifier

Comparison of industrial Saccharomyces cerevisiae strains for second generation bioethanol production

Kasavi C., Finore I., Nicolaus B., Oner E. T., Kirdar B., Oliver S. G.
NEW BIOTECHNOLOGY , vol.25, 2009 (SCI-Expanded) identifier
Articles Published in Other Journals

Potential biomarkers for lung adenocarcinoma identified by integrative transcriptomics analysis

KASAVİ C.
Biotech Studies , vol.30, no.1, pp.33-42, 2021 (Peer-Reviewed Journal) Sustainable Development

Use of Agro Waste Biomass for α-Amylase Production by Anoxybacillus amylolyticus: Purification and Properties

Finore I., Di Donato P., Poli A., KIRDAR B., KASAVİ C., TOKSOY ÖNER E., et al.
JOURNAL OF MICROBIAL & BIOCHEMICAL TECHNOLOGY , vol.6, no.6, pp.320-326, 2014 (Peer-Reviewed Journal)
Papers Presented at Peer-Reviewed Scientific Conferences

Implications of Machine Learning Approaches in Cancer for Biomarker Discovery: Oversampling and Feature Selection

Soyer S. M., Özbek Sarica P., Kasavi C.
5th International Eurasian Conference on Science, Engineering and Technology (EurasianSciEnTech 2024), Ankara, Turkey, 26 - 28 June 2024, (Summary Text) Sustainable Development

Identification of Molecular Signatures and Therapeutic Targets for COVID-19 and PAH through Multiomics Data Integration

Çığ D., Kasavi C.
9th International BAU Drug Design Congress, İstanbul, Turkey, 29 November - 02 December 2023, pp.165, (Summary Text) Sustainable Development

MicroRNA-Based Drug Repositioning Revealed Candidate Drugs for Abdominal Aortic Aneurysm

Çığ D., Tutar E., Peker Eyüboğlu I., Kori M., Çelik F. B., Çalişkan M., et al.
5th Eurasia Biochemical Approaches & Technologies Congress (EBAT), Antalya, Turkey, 2 - 05 November 2023, pp.68, (Summary Text)

Molecular Substrates of COVID-19 and Pulmonary Arterial Hypertension Identified Through Signalling Network Construction

Cig D., KASAVİ C.
6th International Eurasian Conference on Biological and Chemical Sciences (EurasianBioChem 2023), Ankara, Turkey, 11 - 13 October 2023, pp.429, (Summary Text)

Analysis of multi-omics data revealed candidate drugs for COVID-19

Cig D., KASAVİ C.
16th International Symposium on Health Informatics and Bioinformatics (HIBIT), Ankara, Turkey, 4 - 06 October 2023, (Summary Text)

İdiyopatik pulmoner fibrozise yönelik moleküler belirteçlerin sistem biyolojisi yaklaşımları ile belirlenmesi

AKÇA M. N., KASAVİ C.
25. Ulusal Biyoloji Kongresi, İzmir, Turkey, 13 - 15 July 2023, pp.199, (Summary Text)

Identification of common signatures in pulmonary diseases by bioinformatic analysis

KASAVİ C.
International Congress of Multidiciplinary Medical and Health Sciences Studies, Ankara, Turkey, 27 May 2023, (Summary Text)

Microbial and Enzymatic Production of Halomonas Levan

KIRTEL O., KASAVİ C., TOKSOY ÖNER E.
IX. International Fructan Symposium, İstanbul, Turkey, 10 October 2022, (Summary Text)

Biyoinformatik analizlerle COVID-19 ve pulmoner arteriyel hipertansiyon ile ilişkili aktif modüllerin belirlenmesi

Cig D., KASAVİ C.
11. Ulusal Moleküler Biyoloji ve Biyoteknoloji Kongresi, Online, Turkey, 08 October 2022, (Summary Text)

Differential co-expression network analysis revealed a novel prognostic module in thyroid cancer

KASAVİ C.
2nd International Symposium of Scientific Research and Innovative Studies (ISSRIS’22), Online, Turkey, 02 March 2022, (Summary Text)

A System-based network approach to identify prognostic biomarker candidates for lung adenocarcinoma

KASAVİ C.
4. Uluslararası Erciyes Bilimsel Araştırmalar Kongresi, Kayseri, Turkey, 16 October 2020, (Summary Text) Sustainable Development

Investigation of Transcriptional Response to Ethanol Stress in Saccharomyces cerevisiae

KASAVİ C., ERASLAN S., TOKSOY ÖNER E., KIRDAR B.
2nd Applied Synthetic Biology in Europe, Malaga, Spain, 25 - 27 November 2013, (Summary Text)

A systems based approach to understand transcriptional differences of amylolytic saccharomyces cerevisiae strains developed for bioethanol production

Kasavi C., Oner E. T., Kirdar B.
22nd IUBMB Congress/37th FEBS Congress, Sevilla, Spain, 4 - 09 September 2012, vol.279, pp.521-522, (Summary Text) identifier

Investigation of the Response to Ethanol Stress in Saccharomyces cerevisiae

KASAVİ C., TOKSOY ÖNER E., KIRDAR B.
Microbial Stress: from Molecules to Systems (second meeting organized by European Federation of Biotechnology Section on Microbial Physiology), Belgirate, Italy, 10 - 13 May 2012, (Summary Text)

Genomic Comparison of Ethanol Tolerance Genes of Industrial Saccharomyces cerevisiae Strains

KASAVİ C., TOKSOY ÖNER E., KIRDAR B.
EMBO (European Molecular Biology Organization) Conference on Comparative Genomics of Eukaryotic Microorganisms: Understanding the Complexity of Diversity, San Feliu de Guixols, Spain, 15 - 20 October 2011, (Summary Text)

Systems Based Modular Approach to Analyze Ethanol Tolerance in Saccharomyces cerevisiae

KASAVİ C., TOKSOY ÖNER E., KIRDAR B.
12th International Conference on Systems Biology, Mannheim, Germany, 28 August - 01 September 2011, (Summary Text)

Genomic Comparison of Ethanol Tolerances of Industrial Saccharomyces cerevisiae Strains

KIRDAR B., KASAVİ C., TOKSOY ÖNER E.
11th International Conference on Systems Biology, Edinburgh, Saint Helena, 10 - 15 October 2010, (Summary Text)

Fermentation Performances of Industrial Yeast Strains in Second Generation Bioethanol Production

KASAVİ C., Finore I., Nicolaus B., TOKSOY ÖNER E., KIRDAR B., Oliver S. G.
International Symposium on Biotechnology: Developments and Trends, Ankara, Turkey, 27 - 30 September 2009, (Summary Text)

Analysis of Dynamic Expression Profiles Using Pre-processed Quantitative PCR Data

CANKORUR ÇETİNKAYA A., KASAVİ C., KIRDAR B.
International Symposium on Biotechnology: Developments and Trends, Ankara, Turkey, 27 - 30 September 2009, (Summary Text)
Books

Research and Production of Microbial Polymers for Food Industry

Selvi S. S., Eminagic E., Kandur M. Y., Ozcan E., Kasavi C., Toksoy Öner E.
in: Bioprocessing for Biomolecules Production, Gustavo Molina,Vijai Gupta,Brahma Singh,Nicholas Gathergood, Editor, John Wiley & Sons, West Sussex, UK , New-Jersey, pp.211-238, 2019
Metrics

Publication

42

Citation (WoS)

188

H-Index (WoS)

8

Citation (Scopus)

226

H-Index (Scopus)

8

Citation (Scholar)

369

H-Index (Scholar)

9

Project

7

Thesis Advisory

4
UN Sustainable Development Goals